Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.68■□□□□ 0.9
LHX3Q9UBR4 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LHX3Q9UBR4 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LHX3Q9UBR4 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LHX3Q9UBR4 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LHX3Q9UBR4 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.68■□□□□ 0.9
LHX3Q9UBR4 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LHX3Q9UBR4 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LHX3Q9UBR4 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LHX3Q9UBR4 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.68■□□□□ 0.9
LHX3Q9UBR4 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LHX3Q9UBR4 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
LHX3Q9UBR4 KRT8P36-201ENST00000489121 1440 ntBASIC20.68■□□□□ 0.9
LHX3Q9UBR4 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.68■□□□□ 0.9
LHX3Q9UBR4 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LHX3Q9UBR4 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.67■□□□□ 0.9
LHX3Q9UBR4 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 AC083880.1-201ENST00000608266 535 ntBASIC20.67■□□□□ 0.9
LHX3Q9UBR4 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LHX3Q9UBR4 AL121603.2-201ENST00000557373 2117 ntBASIC20.66■□□□□ 0.9
LHX3Q9UBR4 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LHX3Q9UBR4 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.66■□□□□ 0.9
LHX3Q9UBR4 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LHX3Q9UBR4 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.66■□□□□ 0.9
LHX3Q9UBR4 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.66■□□□□ 0.9
LHX3Q9UBR4 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LHX3Q9UBR4 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.66■□□□□ 0.9
LHX3Q9UBR4 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LHX3Q9UBR4 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LHX3Q9UBR4 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.65■□□□□ 0.9
LHX3Q9UBR4 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LHX3Q9UBR4 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.65■□□□□ 0.9
LHX3Q9UBR4 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LHX3Q9UBR4 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LHX3Q9UBR4 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LHX3Q9UBR4 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LHX3Q9UBR4 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LHX3Q9UBR4 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LHX3Q9UBR4 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
LHX3Q9UBR4 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LHX3Q9UBR4 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LHX3Q9UBR4 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LHX3Q9UBR4 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LHX3Q9UBR4 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LHX3Q9UBR4 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LHX3Q9UBR4 FP700111.2-201ENST00000619190 1892 ntBASIC20.64■□□□□ 0.9
LHX3Q9UBR4 AC007225.1-201ENST00000566331 1836 ntBASIC20.64■□□□□ 0.9
LHX3Q9UBR4 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LHX3Q9UBR4 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
LHX3Q9UBR4 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
LHX3Q9UBR4 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
LHX3Q9UBR4 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LHX3Q9UBR4 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
LHX3Q9UBR4 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LHX3Q9UBR4 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LHX3Q9UBR4 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
LHX3Q9UBR4 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms