Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
TDP1Q9NUW8 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 AC011484.1-201ENST00000377652 1995 ntBASIC21.15■□□□□ 0.98
TDP1Q9NUW8 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TDP1Q9NUW8 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
TDP1Q9NUW8 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.14■□□□□ 0.98
TDP1Q9NUW8 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.14■□□□□ 0.98
TDP1Q9NUW8 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
TDP1Q9NUW8 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TDP1Q9NUW8 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
TDP1Q9NUW8 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 AC005829.2-201ENST00000571422 1056 ntBASIC21.14■□□□□ 0.97
TDP1Q9NUW8 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TDP1Q9NUW8 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TDP1Q9NUW8 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.12■□□□□ 0.97
TDP1Q9NUW8 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TDP1Q9NUW8 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TDP1Q9NUW8 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TDP1Q9NUW8 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.12■□□□□ 0.97
TDP1Q9NUW8 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21.12■□□□□ 0.97
TDP1Q9NUW8 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TDP1Q9NUW8 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.12■□□□□ 0.97
TDP1Q9NUW8 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TDP1Q9NUW8 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TDP1Q9NUW8 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.11■□□□□ 0.97
TDP1Q9NUW8 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.11■□□□□ 0.97
TDP1Q9NUW8 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TDP1Q9NUW8 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.11■□□□□ 0.97
TDP1Q9NUW8 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TDP1Q9NUW8 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
TDP1Q9NUW8 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.11■□□□□ 0.97
TDP1Q9NUW8 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.11■□□□□ 0.97
TDP1Q9NUW8 AC120498.8-201ENST00000614275 531 ntBASIC21.11■□□□□ 0.97
TDP1Q9NUW8 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.11■□□□□ 0.97
TDP1Q9NUW8 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.11■□□□□ 0.97
TDP1Q9NUW8 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
TDP1Q9NUW8 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TDP1Q9NUW8 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TDP1Q9NUW8 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TDP1Q9NUW8 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.11■□□□□ 0.97
TDP1Q9NUW8 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TDP1Q9NUW8 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TDP1Q9NUW8 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.1■□□□□ 0.97
TDP1Q9NUW8 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
TDP1Q9NUW8 Z98882.1-201ENST00000622160 2253 ntBASIC21.1■□□□□ 0.97
TDP1Q9NUW8 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.1■□□□□ 0.97
TDP1Q9NUW8 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.1■□□□□ 0.97
TDP1Q9NUW8 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms