Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 RARRES2P11-201ENST00000635158 484 ntBASIC20.32■□□□□ 0.84
SSU72Q9NP77 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.32■□□□□ 0.84
SSU72Q9NP77 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SSU72Q9NP77 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.32■□□□□ 0.84
SSU72Q9NP77 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SSU72Q9NP77 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.31■□□□□ 0.84
SSU72Q9NP77 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SSU72Q9NP77 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
SSU72Q9NP77 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SSU72Q9NP77 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.31■□□□□ 0.84
SSU72Q9NP77 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SSU72Q9NP77 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SSU72Q9NP77 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.31■□□□□ 0.84
SSU72Q9NP77 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SSU72Q9NP77 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SSU72Q9NP77 POU5F1P4-201ENST00000413175 1085 ntBASIC20.31■□□□□ 0.84
SSU72Q9NP77 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.31■□□□□ 0.84
SSU72Q9NP77 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.31■□□□□ 0.84
SSU72Q9NP77 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SSU72Q9NP77 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SSU72Q9NP77 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SSU72Q9NP77 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SSU72Q9NP77 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.3■□□□□ 0.84
SSU72Q9NP77 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SSU72Q9NP77 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.3■□□□□ 0.84
SSU72Q9NP77 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.3■□□□□ 0.84
SSU72Q9NP77 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.3■□□□□ 0.84
SSU72Q9NP77 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SSU72Q9NP77 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.3■□□□□ 0.84
SSU72Q9NP77 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.3■□□□□ 0.84
SSU72Q9NP77 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SSU72Q9NP77 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSU72Q9NP77 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSU72Q9NP77 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSU72Q9NP77 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
SSU72Q9NP77 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SSU72Q9NP77 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.29■□□□□ 0.84
SSU72Q9NP77 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.29■□□□□ 0.84
SSU72Q9NP77 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSU72Q9NP77 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSU72Q9NP77 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSU72Q9NP77 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSU72Q9NP77 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.29■□□□□ 0.84
SSU72Q9NP77 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSU72Q9NP77 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.29■□□□□ 0.84
SSU72Q9NP77 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSU72Q9NP77 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSU72Q9NP77 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSU72Q9NP77 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSU72Q9NP77 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSU72Q9NP77 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSU72Q9NP77 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSU72Q9NP77 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
SSU72Q9NP77 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.28■□□□□ 0.84
SSU72Q9NP77 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SSU72Q9NP77 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.28■□□□□ 0.84
SSU72Q9NP77 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SSU72Q9NP77 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SSU72Q9NP77 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SSU72Q9NP77 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SSU72Q9NP77 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.28■□□□□ 0.84
SSU72Q9NP77 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SSU72Q9NP77 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SSU72Q9NP77 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SSU72Q9NP77 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
SSU72Q9NP77 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SSU72Q9NP77 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SSU72Q9NP77 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SSU72Q9NP77 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
SSU72Q9NP77 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SSU72Q9NP77 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SSU72Q9NP77 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SSU72Q9NP77 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SSU72Q9NP77 AC005332.7-201ENST00000614046 2005 ntBASIC20.27■□□□□ 0.84
SSU72Q9NP77 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SSU72Q9NP77 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SSU72Q9NP77 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.27■□□□□ 0.84
SSU72Q9NP77 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
SSU72Q9NP77 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.27■□□□□ 0.84
SSU72Q9NP77 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.27■□□□□ 0.84
SSU72Q9NP77 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.27■□□□□ 0.84
SSU72Q9NP77 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
SSU72Q9NP77 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SSU72Q9NP77 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.27■□□□□ 0.84
SSU72Q9NP77 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.27■□□□□ 0.84
SSU72Q9NP77 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.27■□□□□ 0.84
SSU72Q9NP77 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.27■□□□□ 0.84
SSU72Q9NP77 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.27■□□□□ 0.84
SSU72Q9NP77 AC008175.2-201ENST00000612840 297 ntBASIC20.27■□□□□ 0.84
SSU72Q9NP77 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SSU72Q9NP77 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.27■□□□□ 0.84
SSU72Q9NP77 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.27■□□□□ 0.84
SSU72Q9NP77 TNXA-203ENST00000507684 2038 ntBASIC20.27■□□□□ 0.84
SSU72Q9NP77 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SSU72Q9NP77 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
SSU72Q9NP77 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.27■□□□□ 0.83
SSU72Q9NP77 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SSU72Q9NP77 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.83
SSU72Q9NP77 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SSU72Q9NP77 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms