Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.13■□□□□ 0.97
PCDH9Q9HC56 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
PCDH9Q9HC56 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDH9Q9HC56 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.13■□□□□ 0.97
PCDH9Q9HC56 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDH9Q9HC56 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCDH9Q9HC56 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.13■□□□□ 0.97
PCDH9Q9HC56 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCDH9Q9HC56 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDH9Q9HC56 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCDH9Q9HC56 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 AL391422.3-201ENST00000603791 2761 ntBASIC21.12■□□□□ 0.97
PCDH9Q9HC56 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDH9Q9HC56 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 AC245052.3-201ENST00000450182 901 ntBASIC21.11■□□□□ 0.97
PCDH9Q9HC56 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 AC022517.1-201ENST00000592429 346 ntBASIC21.11■□□□□ 0.97
PCDH9Q9HC56 UBE2DNL-204ENST00000602536 740 ntBASIC21.11■□□□□ 0.97
PCDH9Q9HC56 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDH9Q9HC56 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.1■□□□□ 0.97
PCDH9Q9HC56 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDH9Q9HC56 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PCDH9Q9HC56 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDH9Q9HC56 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDH9Q9HC56 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PCDH9Q9HC56 AC016769.1-201ENST00000409132 1010 ntBASIC21.1■□□□□ 0.97
PCDH9Q9HC56 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDH9Q9HC56 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.1■□□□□ 0.97
PCDH9Q9HC56 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PCDH9Q9HC56 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PCDH9Q9HC56 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDH9Q9HC56 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.1■□□□□ 0.97
PCDH9Q9HC56 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.1■□□□□ 0.97
PCDH9Q9HC56 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
PCDH9Q9HC56 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDH9Q9HC56 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 AL121603.2-201ENST00000557373 2117 ntBASIC21.09■□□□□ 0.97
PCDH9Q9HC56 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
PCDH9Q9HC56 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms