Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
USP29Q9HBJ7 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
USP29Q9HBJ7 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.08■□□□□ 0.97
USP29Q9HBJ7 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.08■□□□□ 0.97
USP29Q9HBJ7 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.08■□□□□ 0.97
USP29Q9HBJ7 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.08■□□□□ 0.96
USP29Q9HBJ7 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
USP29Q9HBJ7 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.08■□□□□ 0.96
USP29Q9HBJ7 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.08■□□□□ 0.96
USP29Q9HBJ7 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.08■□□□□ 0.96
USP29Q9HBJ7 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
USP29Q9HBJ7 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.08■□□□□ 0.96
USP29Q9HBJ7 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 RBM17P2-201ENST00000616397 1405 ntBASIC21.07■□□□□ 0.96
USP29Q9HBJ7 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 NCF1B-203ENST00000435988 1254 ntBASIC21.07■□□□□ 0.96
USP29Q9HBJ7 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 AC243732.1-201ENST00000612648 864 ntBASIC21.07■□□□□ 0.96
USP29Q9HBJ7 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 AC116050.2-201ENST00000612102 1779 ntBASIC21.07■□□□□ 0.96
USP29Q9HBJ7 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP29Q9HBJ7 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 AC091799.1-201ENST00000422823 811 ntBASIC21.06■□□□□ 0.96
USP29Q9HBJ7 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 CROCCP5-201ENST00000436658 830 ntBASIC21.06■□□□□ 0.96
USP29Q9HBJ7 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.06■□□□□ 0.96
USP29Q9HBJ7 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 AL109923.1-201ENST00000618799 583 ntBASIC21.06■□□□□ 0.96
USP29Q9HBJ7 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP29Q9HBJ7 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 AL512408.1-201ENST00000569378 2000 ntBASIC21.05■□□□□ 0.96
USP29Q9HBJ7 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.05■□□□□ 0.96
USP29Q9HBJ7 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
USP29Q9HBJ7 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP29Q9HBJ7 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP29Q9HBJ7 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms