Protein–RNA interactions for Protein: Q9BZS1

FOXP3, Forkhead box protein P3, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXP3Q9BZS1 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 AC016769.1-201ENST00000409132 1010 ntBASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 AC053503.5-201ENST00000601508 636 ntBASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
FOXP3Q9BZS1 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
FOXP3Q9BZS1 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
FOXP3Q9BZS1 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
FOXP3Q9BZS1 AP004607.4-201ENST00000530158 1459 ntBASIC21.08■□□□□ 0.97
FOXP3Q9BZS1 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.08■□□□□ 0.97
FOXP3Q9BZS1 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
FOXP3Q9BZS1 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
FOXP3Q9BZS1 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.08■□□□□ 0.97
FOXP3Q9BZS1 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.08■□□□□ 0.97
FOXP3Q9BZS1 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.08■□□□□ 0.97
FOXP3Q9BZS1 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.08■□□□□ 0.97
FOXP3Q9BZS1 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
FOXP3Q9BZS1 AC080038.1-201ENST00000611274 1154 ntBASIC21.08■□□□□ 0.97
FOXP3Q9BZS1 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
FOXP3Q9BZS1 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.08■□□□□ 0.96
FOXP3Q9BZS1 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
FOXP3Q9BZS1 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.08■□□□□ 0.96
FOXP3Q9BZS1 AC007952.6-201ENST00000573168 2673 ntBASIC21.08■□□□□ 0.96
FOXP3Q9BZS1 AC003957.1-201ENST00000625108 2673 ntBASIC21.08■□□□□ 0.96
FOXP3Q9BZS1 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.08■□□□□ 0.96
FOXP3Q9BZS1 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 EEF1DP3-203ENST00000566025 782 ntBASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXP3Q9BZS1 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 AC004854.2-201ENST00000608450 1441 ntBASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 HLA-L-209ENST00000420110 1011 ntBASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
FOXP3Q9BZS1 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 AC006015.1-201ENST00000429970 570 ntBASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 AC099778.1-201ENST00000568593 1911 ntBASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXP3Q9BZS1 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXP3Q9BZS1 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXP3Q9BZS1 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
FOXP3Q9BZS1 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXP3Q9BZS1 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms