Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC17.81■□□□□ 0.44
NKX3-1Q99801 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX3-1Q99801 EXOC3-AS1-202ENST00000623673 1663 ntBASIC17.8■□□□□ 0.44
NKX3-1Q99801 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX3-1Q99801 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX3-1Q99801 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX3-1Q99801 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.8■□□□□ 0.44
NKX3-1Q99801 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX3-1Q99801 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.8■□□□□ 0.44
NKX3-1Q99801 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX3-1Q99801 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
NKX3-1Q99801 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX3-1Q99801 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NKX3-1Q99801 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC17.8■□□□□ 0.44
NKX3-1Q99801 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC17.8■□□□□ 0.44
NKX3-1Q99801 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.8■□□□□ 0.44
NKX3-1Q99801 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.8■□□□□ 0.44
NKX3-1Q99801 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.8■□□□□ 0.44
NKX3-1Q99801 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NKX3-1Q99801 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
NKX3-1Q99801 AC087289.5-201ENST00000586076 3175 ntBASIC17.8■□□□□ 0.44
NKX3-1Q99801 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NKX3-1Q99801 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.8■□□□□ 0.44
NKX3-1Q99801 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX3-1Q99801 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NKX3-1Q99801 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.8■□□□□ 0.44
NKX3-1Q99801 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
NKX3-1Q99801 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NKX3-1Q99801 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
NKX3-1Q99801 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NKX3-1Q99801 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NKX3-1Q99801 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NKX3-1Q99801 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
NKX3-1Q99801 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NKX3-1Q99801 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC17.79■□□□□ 0.44
NKX3-1Q99801 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NKX3-1Q99801 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC17.79■□□□□ 0.44
NKX3-1Q99801 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
NKX3-1Q99801 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.79■□□□□ 0.44
NKX3-1Q99801 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
NKX3-1Q99801 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NKX3-1Q99801 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC17.79■□□□□ 0.44
NKX3-1Q99801 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NKX3-1Q99801 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX3-1Q99801 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
NKX3-1Q99801 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NKX3-1Q99801 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.78■□□□□ 0.44
NKX3-1Q99801 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX3-1Q99801 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.78■□□□□ 0.44
NKX3-1Q99801 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX3-1Q99801 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.78■□□□□ 0.44
NKX3-1Q99801 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC17.78■□□□□ 0.44
NKX3-1Q99801 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NKX3-1Q99801 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX3-1Q99801 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX3-1Q99801 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX3-1Q99801 FXN-202ENST00000396364 980 ntTSL 5 BASIC17.78■□□□□ 0.44
NKX3-1Q99801 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC17.78■□□□□ 0.44
NKX3-1Q99801 MPST-208ENST00000628507 698 ntTSL 5 BASIC17.78■□□□□ 0.44
NKX3-1Q99801 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX3-1Q99801 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
NKX3-1Q99801 AL162377.1-201ENST00000618844 1793 ntBASIC17.78■□□□□ 0.44
NKX3-1Q99801 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
NKX3-1Q99801 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NKX3-1Q99801 RASA4CP-201ENST00000424092 1398 ntBASIC17.78■□□□□ 0.44
NKX3-1Q99801 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC17.77■□□□□ 0.44
NKX3-1Q99801 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
NKX3-1Q99801 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
NKX3-1Q99801 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NKX3-1Q99801 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NKX3-1Q99801 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
NKX3-1Q99801 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC17.77■□□□□ 0.44
NKX3-1Q99801 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NKX3-1Q99801 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
NKX3-1Q99801 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
NKX3-1Q99801 MFF-208ENST00000409616 1247 ntTSL 5 BASIC17.77■□□□□ 0.44
NKX3-1Q99801 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NKX3-1Q99801 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC17.77■□□□□ 0.44
NKX3-1Q99801 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NKX3-1Q99801 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC17.77■□□□□ 0.44
NKX3-1Q99801 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
NKX3-1Q99801 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NKX3-1Q99801 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
NKX3-1Q99801 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
NKX3-1Q99801 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
NKX3-1Q99801 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
NKX3-1Q99801 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NKX3-1Q99801 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
NKX3-1Q99801 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
NKX3-1Q99801 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
NKX3-1Q99801 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NKX3-1Q99801 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NKX3-1Q99801 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC17.76■□□□□ 0.43
NKX3-1Q99801 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NKX3-1Q99801 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NKX3-1Q99801 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NKX3-1Q99801 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC17.76■□□□□ 0.43
NKX3-1Q99801 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NKX3-1Q99801 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NKX3-1Q99801 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms