Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
SPENQ96T58 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SPENQ96T58 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SPENQ96T58 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SPENQ96T58 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SPENQ96T58 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SPENQ96T58 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SPENQ96T58 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.62■□□□□ 0.57
SPENQ96T58 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SPENQ96T58 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SPENQ96T58 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SPENQ96T58 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.62■□□□□ 0.57
SPENQ96T58 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SPENQ96T58 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SPENQ96T58 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.61■□□□□ 0.57
SPENQ96T58 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SPENQ96T58 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SPENQ96T58 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SPENQ96T58 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SPENQ96T58 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SPENQ96T58 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SPENQ96T58 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SPENQ96T58 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SPENQ96T58 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SPENQ96T58 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.61■□□□□ 0.57
SPENQ96T58 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.61■□□□□ 0.57
SPENQ96T58 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.61■□□□□ 0.57
SPENQ96T58 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SPENQ96T58 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.61■□□□□ 0.57
SPENQ96T58 AC092865.7-201ENST00000641832 219 ntBASIC18.61■□□□□ 0.57
SPENQ96T58 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SPENQ96T58 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SPENQ96T58 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SPENQ96T58 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.61■□□□□ 0.57
SPENQ96T58 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.61■□□□□ 0.57
SPENQ96T58 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SPENQ96T58 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.6■□□□□ 0.57
SPENQ96T58 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.6■□□□□ 0.57
SPENQ96T58 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SPENQ96T58 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.6■□□□□ 0.57
SPENQ96T58 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SPENQ96T58 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SPENQ96T58 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SPENQ96T58 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SPENQ96T58 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.6■□□□□ 0.57
SPENQ96T58 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SPENQ96T58 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.6■□□□□ 0.57
SPENQ96T58 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.6■□□□□ 0.57
SPENQ96T58 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SPENQ96T58 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SPENQ96T58 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.6■□□□□ 0.57
SPENQ96T58 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.6■□□□□ 0.57
SPENQ96T58 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SPENQ96T58 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SPENQ96T58 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SPENQ96T58 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.6■□□□□ 0.57
SPENQ96T58 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.6■□□□□ 0.57
SPENQ96T58 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.6■□□□□ 0.57
SPENQ96T58 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SPENQ96T58 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.59■□□□□ 0.57
SPENQ96T58 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.59■□□□□ 0.57
SPENQ96T58 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SPENQ96T58 AC113347.1-201ENST00000413321 391 ntBASIC18.59■□□□□ 0.57
SPENQ96T58 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SPENQ96T58 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SPENQ96T58 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SPENQ96T58 TERF1P1-201ENST00000311003 1181 ntBASIC18.59■□□□□ 0.57
SPENQ96T58 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
SPENQ96T58 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.59■□□□□ 0.57
SPENQ96T58 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SPENQ96T58 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SPENQ96T58 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SPENQ96T58 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.59■□□□□ 0.57
SPENQ96T58 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SPENQ96T58 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SPENQ96T58 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.59■□□□□ 0.57
SPENQ96T58 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SPENQ96T58 PRKY-204ENST00000533551 1019 ntBASIC18.59■□□□□ 0.57
SPENQ96T58 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.59■□□□□ 0.57
SPENQ96T58 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.59■□□□□ 0.57
SPENQ96T58 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.59■□□□□ 0.57
SPENQ96T58 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
SPENQ96T58 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SPENQ96T58 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SPENQ96T58 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.58■□□□□ 0.57
SPENQ96T58 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SPENQ96T58 AC026471.5-201ENST00000615068 467 ntBASIC18.58■□□□□ 0.57
SPENQ96T58 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SPENQ96T58 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SPENQ96T58 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.58■□□□□ 0.57
SPENQ96T58 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
SPENQ96T58 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SPENQ96T58 CYP21A1P-202ENST00000354927 1481 ntBASIC18.58■□□□□ 0.56
SPENQ96T58 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SPENQ96T58 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
SPENQ96T58 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SPENQ96T58 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SPENQ96T58 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.58■□□□□ 0.56
SPENQ96T58 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
SPENQ96T58 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms