Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC21.1■□□□□ 0.97
TTC28Q96AY4 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC21.1■□□□□ 0.97
TTC28Q96AY4 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC21.1■□□□□ 0.97
TTC28Q96AY4 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
TTC28Q96AY4 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TTC28Q96AY4 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.09■□□□□ 0.97
TTC28Q96AY4 KRT17P6-201ENST00000453795 1220 ntBASIC21.09■□□□□ 0.97
TTC28Q96AY4 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC21.09■□□□□ 0.97
TTC28Q96AY4 AC128688.1-201ENST00000487626 519 ntBASIC21.09■□□□□ 0.97
TTC28Q96AY4 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
TTC28Q96AY4 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TTC28Q96AY4 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TTC28Q96AY4 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.09■□□□□ 0.97
TTC28Q96AY4 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.09■□□□□ 0.97
TTC28Q96AY4 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TTC28Q96AY4 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.09■□□□□ 0.97
TTC28Q96AY4 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.09■□□□□ 0.97
TTC28Q96AY4 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.09■□□□□ 0.97
TTC28Q96AY4 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.09■□□□□ 0.97
TTC28Q96AY4 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.08■□□□□ 0.97
TTC28Q96AY4 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TTC28Q96AY4 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.08■□□□□ 0.97
TTC28Q96AY4 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
TTC28Q96AY4 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.08■□□□□ 0.97
TTC28Q96AY4 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
TTC28Q96AY4 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
TTC28Q96AY4 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
TTC28Q96AY4 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TTC28Q96AY4 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC21.07■□□□□ 0.96
TTC28Q96AY4 AP002982.1-201ENST00000492365 877 ntBASIC21.07■□□□□ 0.96
TTC28Q96AY4 FAM86EP-206ENST00000510506 987 ntBASIC21.07■□□□□ 0.96
TTC28Q96AY4 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TTC28Q96AY4 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.07■□□□□ 0.96
TTC28Q96AY4 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
TTC28Q96AY4 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TTC28Q96AY4 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
TTC28Q96AY4 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC21.07■□□□□ 0.96
TTC28Q96AY4 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC21.07■□□□□ 0.96
TTC28Q96AY4 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
TTC28Q96AY4 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
TTC28Q96AY4 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
TTC28Q96AY4 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
TTC28Q96AY4 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC21.06■□□□□ 0.96
TTC28Q96AY4 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.06■□□□□ 0.96
TTC28Q96AY4 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TTC28Q96AY4 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TTC28Q96AY4 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.06■□□□□ 0.96
TTC28Q96AY4 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21.06■□□□□ 0.96
TTC28Q96AY4 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.06■□□□□ 0.96
TTC28Q96AY4 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TTC28Q96AY4 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TTC28Q96AY4 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TTC28Q96AY4 AL390719.1-204ENST00000412397 1219 ntBASIC21.05■□□□□ 0.96
TTC28Q96AY4 AC091390.4-202ENST00000476426 537 ntBASIC21.05■□□□□ 0.96
TTC28Q96AY4 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TTC28Q96AY4 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TTC28Q96AY4 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
TTC28Q96AY4 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TTC28Q96AY4 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.05■□□□□ 0.96
TTC28Q96AY4 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TTC28Q96AY4 TSPY14P-201ENST00000303979 915 ntBASIC21.05■□□□□ 0.96
TTC28Q96AY4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TTC28Q96AY4 AP005242.2-201ENST00000580065 1175 ntBASIC21.05■□□□□ 0.96
TTC28Q96AY4 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.05■□□□□ 0.96
TTC28Q96AY4 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.05■□□□□ 0.96
TTC28Q96AY4 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
TTC28Q96AY4 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TTC28Q96AY4 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.04■□□□□ 0.96
TTC28Q96AY4 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.04■□□□□ 0.96
TTC28Q96AY4 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TTC28Q96AY4 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.04■□□□□ 0.96
TTC28Q96AY4 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
TTC28Q96AY4 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TTC28Q96AY4 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TTC28Q96AY4 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
TTC28Q96AY4 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC21.04■□□□□ 0.96
TTC28Q96AY4 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TTC28Q96AY4 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.04■□□□□ 0.96
TTC28Q96AY4 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TTC28Q96AY4 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TTC28Q96AY4 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
TTC28Q96AY4 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
TTC28Q96AY4 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TTC28Q96AY4 AC026271.3-201ENST00000571884 352 ntBASIC21.03■□□□□ 0.96
TTC28Q96AY4 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
TTC28Q96AY4 AL671883.3-201ENST00000603274 991 ntBASIC21.03■□□□□ 0.96
TTC28Q96AY4 AC069148.1-201ENST00000608741 768 ntBASIC21.03■□□□□ 0.96
TTC28Q96AY4 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.03■□□□□ 0.96
TTC28Q96AY4 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TTC28Q96AY4 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TTC28Q96AY4 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TTC28Q96AY4 TSPY21P-201ENST00000433481 731 ntBASIC21.03■□□□□ 0.96
TTC28Q96AY4 TSPY23P-201ENST00000440136 739 ntBASIC21.03■□□□□ 0.96
TTC28Q96AY4 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC21.03■□□□□ 0.96
TTC28Q96AY4 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC21.03■□□□□ 0.96
TTC28Q96AY4 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
TTC28Q96AY4 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
TTC28Q96AY4 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
TTC28Q96AY4 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TTC28Q96AY4 AC124283.5-201ENST00000624661 1809 ntBASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms