Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 AC006557.6-201ENST00000623071 864 ntBASIC20.59■□□□□ 0.89
HMGB4Q8WW32 AC073912.3-201ENST00000624414 853 ntBASIC20.59■□□□□ 0.89
HMGB4Q8WW32 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB4Q8WW32 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB4Q8WW32 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
HMGB4Q8WW32 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.58■□□□□ 0.89
HMGB4Q8WW32 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB4Q8WW32 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB4Q8WW32 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB4Q8WW32 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
HMGB4Q8WW32 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.58■□□□□ 0.89
HMGB4Q8WW32 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
HMGB4Q8WW32 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB4Q8WW32 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.58■□□□□ 0.89
HMGB4Q8WW32 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
HMGB4Q8WW32 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB4Q8WW32 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.58■□□□□ 0.89
HMGB4Q8WW32 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.58■□□□□ 0.89
HMGB4Q8WW32 AL023875.1-201ENST00000640777 796 ntBASIC20.58■□□□□ 0.89
HMGB4Q8WW32 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB4Q8WW32 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.58■□□□□ 0.88
HMGB4Q8WW32 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB4Q8WW32 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.58■□□□□ 0.88
HMGB4Q8WW32 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB4Q8WW32 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB4Q8WW32 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
HMGB4Q8WW32 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB4Q8WW32 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB4Q8WW32 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB4Q8WW32 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB4Q8WW32 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB4Q8WW32 ECEL1P3-201ENST00000427961 737 ntBASIC20.57■□□□□ 0.88
HMGB4Q8WW32 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
HMGB4Q8WW32 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB4Q8WW32 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB4Q8WW32 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
HMGB4Q8WW32 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.57■□□□□ 0.88
HMGB4Q8WW32 MTDHP1-201ENST00000605323 784 ntBASIC20.57■□□□□ 0.88
HMGB4Q8WW32 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB4Q8WW32 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.57■□□□□ 0.88
HMGB4Q8WW32 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
HMGB4Q8WW32 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB4Q8WW32 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.56■□□□□ 0.88
HMGB4Q8WW32 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
HMGB4Q8WW32 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 AC239809.2-201ENST00000415381 517 ntBASIC20.55■□□□□ 0.88
HMGB4Q8WW32 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 AC120498.8-201ENST00000614275 531 ntBASIC20.55■□□□□ 0.88
HMGB4Q8WW32 AL356652.1-201ENST00000615962 565 ntBASIC20.55■□□□□ 0.88
HMGB4Q8WW32 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
HMGB4Q8WW32 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms