Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
NKX2-3Q8TAU0 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
NKX2-3Q8TAU0 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
NKX2-3Q8TAU0 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
NKX2-3Q8TAU0 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
NKX2-3Q8TAU0 GAS7-202ENST00000396115 929 ntTSL 5 BASIC24.31■■□□□ 1.48
NKX2-3Q8TAU0 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC24.31■■□□□ 1.48
NKX2-3Q8TAU0 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC24.31■■□□□ 1.48
NKX2-3Q8TAU0 MMAB-206ENST00000540016 945 ntTSL 3 BASIC24.31■■□□□ 1.48
NKX2-3Q8TAU0 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC24.31■■□□□ 1.48
NKX2-3Q8TAU0 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC24.31■■□□□ 1.48
NKX2-3Q8TAU0 AL162412.1-201ENST00000567129 965 ntBASIC24.31■■□□□ 1.48
NKX2-3Q8TAU0 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
NKX2-3Q8TAU0 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
NKX2-3Q8TAU0 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
NKX2-3Q8TAU0 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
NKX2-3Q8TAU0 AC011484.1-201ENST00000377652 1995 ntBASIC24.31■■□□□ 1.48
NKX2-3Q8TAU0 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
NKX2-3Q8TAU0 AC010980.2-201ENST00000587099 1412 ntBASIC24.3■■□□□ 1.48
NKX2-3Q8TAU0 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
NKX2-3Q8TAU0 AC007322.3-201ENST00000426526 701 ntBASIC24.3■■□□□ 1.48
NKX2-3Q8TAU0 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC24.3■■□□□ 1.48
NKX2-3Q8TAU0 AC069236.1-201ENST00000604339 616 ntBASIC24.3■■□□□ 1.48
NKX2-3Q8TAU0 AC083880.1-201ENST00000608266 535 ntBASIC24.3■■□□□ 1.48
NKX2-3Q8TAU0 FAM21FP-204ENST00000608637 956 ntBASIC24.3■■□□□ 1.48
NKX2-3Q8TAU0 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC24.3■■□□□ 1.48
NKX2-3Q8TAU0 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
NKX2-3Q8TAU0 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
NKX2-3Q8TAU0 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC24.3■■□□□ 1.48
NKX2-3Q8TAU0 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
NKX2-3Q8TAU0 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
NKX2-3Q8TAU0 AC121338.2-201ENST00000622535 1744 ntBASIC24.3■■□□□ 1.48
NKX2-3Q8TAU0 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
NKX2-3Q8TAU0 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NKX2-3Q8TAU0 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC24.29■■□□□ 1.48
NKX2-3Q8TAU0 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NKX2-3Q8TAU0 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NKX2-3Q8TAU0 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NKX2-3Q8TAU0 MIR1224-201ENST00000408193 85 ntBASIC24.29■■□□□ 1.48
NKX2-3Q8TAU0 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
NKX2-3Q8TAU0 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC24.29■■□□□ 1.48
NKX2-3Q8TAU0 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC24.29■■□□□ 1.48
NKX2-3Q8TAU0 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC24.29■■□□□ 1.48
NKX2-3Q8TAU0 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NKX2-3Q8TAU0 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NKX2-3Q8TAU0 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
NKX2-3Q8TAU0 KRT17P1-201ENST00000399211 1546 ntBASIC24.29■■□□□ 1.48
NKX2-3Q8TAU0 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
NKX2-3Q8TAU0 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC24.29■■□□□ 1.48
NKX2-3Q8TAU0 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
NKX2-3Q8TAU0 AL121603.2-201ENST00000557373 2117 ntBASIC24.28■■□□□ 1.48
NKX2-3Q8TAU0 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC24.28■■□□□ 1.48
NKX2-3Q8TAU0 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC24.28■■□□□ 1.48
NKX2-3Q8TAU0 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
NKX2-3Q8TAU0 SAPCD2P1-201ENST00000395413 1184 ntBASIC24.28■■□□□ 1.48
NKX2-3Q8TAU0 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC24.28■■□□□ 1.48
NKX2-3Q8TAU0 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC24.28■■□□□ 1.48
NKX2-3Q8TAU0 MYC-209ENST00000641252 345 ntBASIC24.28■■□□□ 1.48
NKX2-3Q8TAU0 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
NKX2-3Q8TAU0 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC24.28■■□□□ 1.48
NKX2-3Q8TAU0 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 ERF-202ENST00000440177 2032 ntTSL 2 BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 AC008550.1-201ENST00000511500 884 ntBASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
NKX2-3Q8TAU0 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC24.27■■□□□ 1.47
NKX2-3Q8TAU0 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
NKX2-3Q8TAU0 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
NKX2-3Q8TAU0 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
NKX2-3Q8TAU0 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
NKX2-3Q8TAU0 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC24.26■■□□□ 1.47
NKX2-3Q8TAU0 USP36-216ENST00000589424 970 ntTSL 5 BASIC24.26■■□□□ 1.47
NKX2-3Q8TAU0 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
NKX2-3Q8TAU0 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
NKX2-3Q8TAU0 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC24.26■■□□□ 1.47
NKX2-3Q8TAU0 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
NKX2-3Q8TAU0 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC24.25■■□□□ 1.47
NKX2-3Q8TAU0 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC24.25■■□□□ 1.47
NKX2-3Q8TAU0 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
NKX2-3Q8TAU0 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NKX2-3Q8TAU0 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NKX2-3Q8TAU0 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NKX2-3Q8TAU0 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
NKX2-3Q8TAU0 BX276092.2-201ENST00000417668 665 ntBASIC24.25■■□□□ 1.47
NKX2-3Q8TAU0 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
NKX2-3Q8TAU0 UBE2SP1-201ENST00000450587 669 ntBASIC24.25■■□□□ 1.47
NKX2-3Q8TAU0 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC24.25■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms