Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
DEPDC4Q8N2C3 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.96■□□□□ 0.63
DEPDC4Q8N2C3 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
DEPDC4Q8N2C3 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
DEPDC4Q8N2C3 AC087623.3-201ENST00000607047 1098 ntBASIC18.96■□□□□ 0.63
DEPDC4Q8N2C3 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.96■□□□□ 0.63
DEPDC4Q8N2C3 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
DEPDC4Q8N2C3 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
DEPDC4Q8N2C3 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
DEPDC4Q8N2C3 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
DEPDC4Q8N2C3 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.96■□□□□ 0.63
DEPDC4Q8N2C3 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
DEPDC4Q8N2C3 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 AC027612.3-201ENST00000413684 1047 ntBASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 AC123595.1-201ENST00000440769 1046 ntBASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 AC034268.1-201ENST00000441047 882 ntBASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DEPDC4Q8N2C3 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.94■□□□□ 0.62
DEPDC4Q8N2C3 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 AL162377.1-201ENST00000618844 1793 ntBASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
DEPDC4Q8N2C3 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
DEPDC4Q8N2C3 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
DEPDC4Q8N2C3 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.92■□□□□ 0.62
DEPDC4Q8N2C3 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.92■□□□□ 0.62
DEPDC4Q8N2C3 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
DEPDC4Q8N2C3 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
DEPDC4Q8N2C3 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
DEPDC4Q8N2C3 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms