Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
USP48Q86UV5 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
USP48Q86UV5 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC25.08■■□□□ 1.61
USP48Q86UV5 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC25.08■■□□□ 1.61
USP48Q86UV5 AC061975.6-201ENST00000579045 1553 ntBASIC25.08■■□□□ 1.61
USP48Q86UV5 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
USP48Q86UV5 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
USP48Q86UV5 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC25.08■■□□□ 1.61
USP48Q86UV5 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.6
USP48Q86UV5 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
USP48Q86UV5 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC25.07■■□□□ 1.6
USP48Q86UV5 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
USP48Q86UV5 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
USP48Q86UV5 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
USP48Q86UV5 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC25.07■■□□□ 1.6
USP48Q86UV5 KRT17P3-201ENST00000420566 1262 ntBASIC25.07■■□□□ 1.6
USP48Q86UV5 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
USP48Q86UV5 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
USP48Q86UV5 KRT18P21-201ENST00000515767 1272 ntBASIC25.07■■□□□ 1.6
USP48Q86UV5 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC25.07■■□□□ 1.6
USP48Q86UV5 AC233263.1-201ENST00000578059 224 ntBASIC25.07■■□□□ 1.6
USP48Q86UV5 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
USP48Q86UV5 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC25.07■■□□□ 1.6
USP48Q86UV5 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
USP48Q86UV5 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
USP48Q86UV5 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
USP48Q86UV5 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
USP48Q86UV5 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
USP48Q86UV5 MED17-221ENST00000639724 2317 ntTSL 5 BASIC25.06■■□□□ 1.6
USP48Q86UV5 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
USP48Q86UV5 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
USP48Q86UV5 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
USP48Q86UV5 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
USP48Q86UV5 CD44-222ENST00000526025 1052 ntTSL 2 BASIC25.06■■□□□ 1.6
USP48Q86UV5 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC25.06■■□□□ 1.6
USP48Q86UV5 LINC01023-201ENST00000606054 436 ntBASIC25.06■■□□□ 1.6
USP48Q86UV5 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC25.06■■□□□ 1.6
USP48Q86UV5 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
USP48Q86UV5 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
USP48Q86UV5 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
USP48Q86UV5 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
USP48Q86UV5 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
USP48Q86UV5 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
USP48Q86UV5 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC25.05■■□□□ 1.6
USP48Q86UV5 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
USP48Q86UV5 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC25.05■■□□□ 1.6
USP48Q86UV5 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC25.05■■□□□ 1.6
USP48Q86UV5 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
USP48Q86UV5 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
USP48Q86UV5 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC25.05■■□□□ 1.6
USP48Q86UV5 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC25.05■■□□□ 1.6
USP48Q86UV5 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
USP48Q86UV5 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
USP48Q86UV5 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
USP48Q86UV5 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
USP48Q86UV5 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
USP48Q86UV5 SLC25A24-204ENST00000569674 2357 ntBASIC25.04■■□□□ 1.6
USP48Q86UV5 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC25.04■■□□□ 1.6
USP48Q86UV5 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
USP48Q86UV5 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
USP48Q86UV5 GOLGA2P6-201ENST00000340929 2049 ntBASIC25.04■■□□□ 1.6
USP48Q86UV5 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC25.04■■□□□ 1.6
USP48Q86UV5 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
USP48Q86UV5 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
USP48Q86UV5 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
USP48Q86UV5 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC25.04■■□□□ 1.6
USP48Q86UV5 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
USP48Q86UV5 RPS20-210ENST00000523936 899 ntTSL 2 BASIC25.04■■□□□ 1.6
USP48Q86UV5 PNMA6B-201ENST00000538162 1200 ntBASIC25.04■■□□□ 1.6
USP48Q86UV5 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
USP48Q86UV5 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC25.04■■□□□ 1.6
USP48Q86UV5 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
USP48Q86UV5 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
USP48Q86UV5 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
USP48Q86UV5 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
USP48Q86UV5 RARG-204ENST00000543726 1779 ntTSL 2 BASIC25.03■■□□□ 1.6
USP48Q86UV5 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
USP48Q86UV5 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
USP48Q86UV5 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
USP48Q86UV5 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
USP48Q86UV5 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
USP48Q86UV5 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
USP48Q86UV5 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
USP48Q86UV5 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC25.03■■□□□ 1.6
USP48Q86UV5 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC25.03■■□□□ 1.6
USP48Q86UV5 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
USP48Q86UV5 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC25.03■■□□□ 1.6
USP48Q86UV5 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
USP48Q86UV5 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
USP48Q86UV5 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC25.03■■□□□ 1.6
USP48Q86UV5 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC25.03■■□□□ 1.6
USP48Q86UV5 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC25.03■■□□□ 1.6
USP48Q86UV5 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
USP48Q86UV5 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC25.02■■□□□ 1.6
USP48Q86UV5 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC25.02■■□□□ 1.6
USP48Q86UV5 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
USP48Q86UV5 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
USP48Q86UV5 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
USP48Q86UV5 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC25.02■■□□□ 1.6
USP48Q86UV5 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC25.02■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms