Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 MIR2861-201ENST00000636310 90 ntBASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF549Q6P9A3 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF549Q6P9A3 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.3■□□□□ 0.84
ZNF549Q6P9A3 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
ZNF549Q6P9A3 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF549Q6P9A3 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.3■□□□□ 0.84
ZNF549Q6P9A3 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF549Q6P9A3 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF549Q6P9A3 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF549Q6P9A3 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
ZNF549Q6P9A3 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.3■□□□□ 0.84
ZNF549Q6P9A3 AC010536.3-201ENST00000620306 533 ntBASIC20.3■□□□□ 0.84
ZNF549Q6P9A3 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF549Q6P9A3 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.3■□□□□ 0.84
ZNF549Q6P9A3 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 AC007322.3-201ENST00000426526 701 ntBASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 AL512408.1-201ENST00000569378 2000 ntBASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.29■□□□□ 0.84
ZNF549Q6P9A3 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 SLC25A24-204ENST00000569674 2357 ntBASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 TERF1P5-201ENST00000477545 1207 ntBASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 AC137761.2-201ENST00000561729 223 ntBASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 AC145350.3-201ENST00000569033 163 ntBASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 AL162377.1-201ENST00000618844 1793 ntBASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.28■□□□□ 0.84
ZNF549Q6P9A3 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms