Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
RNF4P78317 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.96■□□□□ 0.63
RNF4P78317 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
RNF4P78317 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF4P78317 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.96■□□□□ 0.63
RNF4P78317 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF4P78317 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF4P78317 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RNF4P78317 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
RNF4P78317 PGM5P4-201ENST00000421970 445 ntBASIC18.96■□□□□ 0.63
RNF4P78317 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.96■□□□□ 0.63
RNF4P78317 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.96■□□□□ 0.63
RNF4P78317 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.96■□□□□ 0.63
RNF4P78317 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.96■□□□□ 0.63
RNF4P78317 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
RNF4P78317 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.96■□□□□ 0.63
RNF4P78317 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RNF4P78317 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
RNF4P78317 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.96■□□□□ 0.63
RNF4P78317 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.96■□□□□ 0.63
RNF4P78317 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.96■□□□□ 0.63
RNF4P78317 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF4P78317 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RNF4P78317 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF4P78317 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF4P78317 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
RNF4P78317 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF4P78317 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.95■□□□□ 0.62
RNF4P78317 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RNF4P78317 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF4P78317 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.95■□□□□ 0.62
RNF4P78317 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF4P78317 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF4P78317 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
RNF4P78317 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.95■□□□□ 0.62
RNF4P78317 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.95■□□□□ 0.62
RNF4P78317 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RNF4P78317 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.95■□□□□ 0.62
RNF4P78317 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF4P78317 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.95■□□□□ 0.62
RNF4P78317 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF4P78317 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.95■□□□□ 0.62
RNF4P78317 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF4P78317 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF4P78317 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
RNF4P78317 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
RNF4P78317 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.94■□□□□ 0.62
RNF4P78317 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF4P78317 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF4P78317 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
RNF4P78317 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF4P78317 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF4P78317 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF4P78317 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF4P78317 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.94■□□□□ 0.62
RNF4P78317 DUSP5P2-201ENST00000426873 1033 ntBASIC18.94■□□□□ 0.62
RNF4P78317 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.94■□□□□ 0.62
RNF4P78317 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.94■□□□□ 0.62
RNF4P78317 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF4P78317 AC105020.6-201ENST00000621523 1217 ntBASIC18.94■□□□□ 0.62
RNF4P78317 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.94■□□□□ 0.62
RNF4P78317 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF4P78317 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF4P78317 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF4P78317 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF4P78317 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF4P78317 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.94■□□□□ 0.62
RNF4P78317 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF4P78317 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF4P78317 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF4P78317 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF4P78317 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RNF4P78317 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
RNF4P78317 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
RNF4P78317 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
RNF4P78317 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.93■□□□□ 0.62
RNF4P78317 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
RNF4P78317 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.93■□□□□ 0.62
RNF4P78317 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.93■□□□□ 0.62
RNF4P78317 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.93■□□□□ 0.62
RNF4P78317 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.93■□□□□ 0.62
RNF4P78317 AC091874.3-201ENST00000512672 1195 ntBASIC18.93■□□□□ 0.62
RNF4P78317 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.93■□□□□ 0.62
RNF4P78317 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF4P78317 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
RNF4P78317 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
RNF4P78317 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF4P78317 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RNF4P78317 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF4P78317 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.93■□□□□ 0.62
RNF4P78317 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF4P78317 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RNF4P78317 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RNF4P78317 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
RNF4P78317 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.92■□□□□ 0.62
RNF4P78317 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RNF4P78317 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
RNF4P78317 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.92■□□□□ 0.62
RNF4P78317 AC097658.1-201ENST00000475555 843 ntBASIC18.92■□□□□ 0.62
RNF4P78317 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms