Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MFSD11-216ENST00000590393 1141 ntBASIC19.81■□□□□ 0.76
HNF4AP41235 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HNF4AP41235 BID-214ENST00000617586 542 ntTSL 5 BASIC19.81■□□□□ 0.76
HNF4AP41235 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HNF4AP41235 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.81■□□□□ 0.76
HNF4AP41235 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.81■□□□□ 0.76
HNF4AP41235 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HNF4AP41235 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HNF4AP41235 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.81■□□□□ 0.76
HNF4AP41235 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HNF4AP41235 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HNF4AP41235 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HNF4AP41235 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.8■□□□□ 0.76
HNF4AP41235 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
HNF4AP41235 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HNF4AP41235 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HNF4AP41235 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HNF4AP41235 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.8■□□□□ 0.76
HNF4AP41235 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.8■□□□□ 0.76
HNF4AP41235 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HNF4AP41235 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
HNF4AP41235 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HNF4AP41235 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
HNF4AP41235 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
HNF4AP41235 AL137784.2-201ENST00000607332 1000 ntBASIC19.8■□□□□ 0.76
HNF4AP41235 AC010536.3-201ENST00000620306 533 ntBASIC19.8■□□□□ 0.76
HNF4AP41235 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
HNF4AP41235 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HNF4AP41235 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.8■□□□□ 0.76
HNF4AP41235 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.8■□□□□ 0.76
HNF4AP41235 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
HNF4AP41235 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HNF4AP41235 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.8■□□□□ 0.76
HNF4AP41235 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 LINC01006-201ENST00000333319 2292 ntBASIC19.79■□□□□ 0.76
HNF4AP41235 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.79■□□□□ 0.76
HNF4AP41235 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.79■□□□□ 0.76
HNF4AP41235 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
HNF4AP41235 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HNF4AP41235 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HNF4AP41235 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HNF4AP41235 AC073130.3-201ENST00000624389 2278 ntBASIC19.78■□□□□ 0.76
HNF4AP41235 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.78■□□□□ 0.76
HNF4AP41235 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.78■□□□□ 0.76
HNF4AP41235 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.78■□□□□ 0.76
HNF4AP41235 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HNF4AP41235 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HNF4AP41235 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
HNF4AP41235 AC073314.1-201ENST00000568729 2216 ntBASIC19.78■□□□□ 0.76
HNF4AP41235 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HNF4AP41235 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HNF4AP41235 AC007322.3-201ENST00000426526 701 ntBASIC19.78■□□□□ 0.76
HNF4AP41235 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HNF4AP41235 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.78■□□□□ 0.76
HNF4AP41235 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HNF4AP41235 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HNF4AP41235 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HNF4AP41235 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HNF4AP41235 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HNF4AP41235 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
HNF4AP41235 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
HNF4AP41235 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
HNF4AP41235 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HNF4AP41235 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HNF4AP41235 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HNF4AP41235 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HNF4AP41235 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HNF4AP41235 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
HNF4AP41235 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HNF4AP41235 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
HNF4AP41235 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.77■□□□□ 0.76
HNF4AP41235 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.77■□□□□ 0.76
HNF4AP41235 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HNF4AP41235 TERF1P5-201ENST00000477545 1207 ntBASIC19.77■□□□□ 0.76
HNF4AP41235 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HNF4AP41235 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.77■□□□□ 0.76
HNF4AP41235 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.76
HNF4AP41235 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.77■□□□□ 0.76
HNF4AP41235 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.76
HNF4AP41235 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HNF4AP41235 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.77■□□□□ 0.76
HNF4AP41235 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms