Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
COL9A1P20849 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL9A1P20849 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL9A1P20849 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL9A1P20849 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
COL9A1P20849 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
COL9A1P20849 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.21■□□□□ 0.99
COL9A1P20849 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL9A1P20849 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL9A1P20849 AC080038.3-201ENST00000623346 1952 ntBASIC21.21■□□□□ 0.99
COL9A1P20849 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL9A1P20849 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.21■□□□□ 0.99
COL9A1P20849 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.21■□□□□ 0.99
COL9A1P20849 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL9A1P20849 AC092053.2-201ENST00000640557 1818 ntBASIC21.2■□□□□ 0.98
COL9A1P20849 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL9A1P20849 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL9A1P20849 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
COL9A1P20849 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.2■□□□□ 0.98
COL9A1P20849 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.2■□□□□ 0.98
COL9A1P20849 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.2■□□□□ 0.98
COL9A1P20849 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL9A1P20849 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.2■□□□□ 0.98
COL9A1P20849 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.2■□□□□ 0.98
COL9A1P20849 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL9A1P20849 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.2■□□□□ 0.98
COL9A1P20849 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
COL9A1P20849 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.2■□□□□ 0.98
COL9A1P20849 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.2■□□□□ 0.98
COL9A1P20849 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.2■□□□□ 0.98
COL9A1P20849 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
COL9A1P20849 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.2■□□□□ 0.98
COL9A1P20849 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.2■□□□□ 0.98
COL9A1P20849 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL9A1P20849 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL9A1P20849 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL9A1P20849 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.19■□□□□ 0.98
COL9A1P20849 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.19■□□□□ 0.98
COL9A1P20849 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL9A1P20849 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.19■□□□□ 0.98
COL9A1P20849 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.19■□□□□ 0.98
COL9A1P20849 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.19■□□□□ 0.98
COL9A1P20849 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
COL9A1P20849 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.19■□□□□ 0.98
COL9A1P20849 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
COL9A1P20849 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL9A1P20849 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL9A1P20849 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.19■□□□□ 0.98
COL9A1P20849 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.18■□□□□ 0.98
COL9A1P20849 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL9A1P20849 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL9A1P20849 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC21.18■□□□□ 0.98
COL9A1P20849 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.18■□□□□ 0.98
COL9A1P20849 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
COL9A1P20849 GRAP-204ENST00000573099 846 ntTSL 3 BASIC21.18■□□□□ 0.98
COL9A1P20849 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.18■□□□□ 0.98
COL9A1P20849 KLK8-205ENST00000593490 267 ntTSL 3 BASIC21.18■□□□□ 0.98
COL9A1P20849 AC006011.2-201ENST00000621313 1158 ntBASIC21.18■□□□□ 0.98
COL9A1P20849 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.18■□□□□ 0.98
COL9A1P20849 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL9A1P20849 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL9A1P20849 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL9A1P20849 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL9A1P20849 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL9A1P20849 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
COL9A1P20849 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL9A1P20849 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL9A1P20849 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL9A1P20849 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
COL9A1P20849 AC246785.2-201ENST00000432512 513 ntBASIC21.17■□□□□ 0.98
COL9A1P20849 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC21.17■□□□□ 0.98
COL9A1P20849 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.17■□□□□ 0.98
COL9A1P20849 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.17■□□□□ 0.98
COL9A1P20849 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
COL9A1P20849 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.17■□□□□ 0.98
COL9A1P20849 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL9A1P20849 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
COL9A1P20849 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.17■□□□□ 0.98
COL9A1P20849 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.17■□□□□ 0.98
COL9A1P20849 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.17■□□□□ 0.98
COL9A1P20849 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL9A1P20849 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
COL9A1P20849 C1orf229-201ENST00000623686 2258 ntBASIC21.17■□□□□ 0.98
COL9A1P20849 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
COL9A1P20849 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL9A1P20849 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL9A1P20849 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL9A1P20849 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL9A1P20849 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.16■□□□□ 0.98
COL9A1P20849 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL9A1P20849 TMA16-209ENST00000513272 803 ntTSL 2 BASIC21.16■□□□□ 0.98
COL9A1P20849 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.16■□□□□ 0.98
COL9A1P20849 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.16■□□□□ 0.98
COL9A1P20849 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.16■□□□□ 0.98
COL9A1P20849 NAPSB-206ENST00000562112 1266 ntBASIC21.16■□□□□ 0.98
COL9A1P20849 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL9A1P20849 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL9A1P20849 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL9A1P20849 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.15■□□□□ 0.98
COL9A1P20849 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms