Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AC142086.2-201ENST00000569753 217 ntBASIC19.69■□□□□ 0.74
LDLRP01130 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.69■□□□□ 0.74
LDLRP01130 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LDLRP01130 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LDLRP01130 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LDLRP01130 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LDLRP01130 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.69■□□□□ 0.74
LDLRP01130 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
LDLRP01130 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.69■□□□□ 0.74
LDLRP01130 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LDLRP01130 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
LDLRP01130 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
LDLRP01130 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LDLRP01130 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.68■□□□□ 0.74
LDLRP01130 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
LDLRP01130 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LDLRP01130 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.68■□□□□ 0.74
LDLRP01130 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LDLRP01130 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
LDLRP01130 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LDLRP01130 KRT19P1-201ENST00000405746 1186 ntBASIC19.68■□□□□ 0.74
LDLRP01130 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LDLRP01130 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
LDLRP01130 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LDLRP01130 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
LDLRP01130 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
LDLRP01130 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.68■□□□□ 0.74
LDLRP01130 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LDLRP01130 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
LDLRP01130 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LDLRP01130 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LDLRP01130 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LDLRP01130 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.67■□□□□ 0.74
LDLRP01130 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LDLRP01130 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LDLRP01130 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LDLRP01130 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LDLRP01130 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LDLRP01130 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.67■□□□□ 0.74
LDLRP01130 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LDLRP01130 AC011767.1-201ENST00000617410 1153 ntBASIC19.67■□□□□ 0.74
LDLRP01130 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.67■□□□□ 0.74
LDLRP01130 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LDLRP01130 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LDLRP01130 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
LDLRP01130 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LDLRP01130 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
LDLRP01130 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LDLRP01130 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.67■□□□□ 0.74
LDLRP01130 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LDLRP01130 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
LDLRP01130 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDLRP01130 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LDLRP01130 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LDLRP01130 PCDHAC2-203ENST00000615316 3011 ntBASIC19.66■□□□□ 0.74
LDLRP01130 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDLRP01130 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
LDLRP01130 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
LDLRP01130 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDLRP01130 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.66■□□□□ 0.74
LDLRP01130 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
LDLRP01130 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.66■□□□□ 0.74
LDLRP01130 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
LDLRP01130 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.66■□□□□ 0.74
LDLRP01130 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.66■□□□□ 0.74
LDLRP01130 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDLRP01130 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDLRP01130 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDLRP01130 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.66■□□□□ 0.74
LDLRP01130 AFG3L1P-217ENST00000557444 2447 ntBASIC19.66■□□□□ 0.74
LDLRP01130 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDLRP01130 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.66■□□□□ 0.74
LDLRP01130 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.66■□□□□ 0.74
LDLRP01130 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LDLRP01130 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDLRP01130 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
LDLRP01130 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.66■□□□□ 0.74
LDLRP01130 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDLRP01130 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDLRP01130 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
LDLRP01130 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDLRP01130 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.65■□□□□ 0.74
LDLRP01130 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.65■□□□□ 0.74
LDLRP01130 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDLRP01130 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDLRP01130 KRT18P11-201ENST00000435214 1283 ntBASIC19.65■□□□□ 0.74
LDLRP01130 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.65■□□□□ 0.74
LDLRP01130 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.65■□□□□ 0.74
LDLRP01130 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.65■□□□□ 0.74
LDLRP01130 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDLRP01130 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.65■□□□□ 0.74
LDLRP01130 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDLRP01130 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
LDLRP01130 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDLRP01130 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.65■□□□□ 0.74
LDLRP01130 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.65■□□□□ 0.74
LDLRP01130 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDLRP01130 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.65■□□□□ 0.74
LDLRP01130 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDLRP01130 PLK5-205ENST00000642079 1969 ntBASIC19.64■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms