Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CPSF4O95639 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.45■□□□□ 0.7
CPSF4O95639 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CPSF4O95639 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.45■□□□□ 0.7
CPSF4O95639 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4O95639 AC245052.3-201ENST00000450182 901 ntBASIC19.45■□□□□ 0.7
CPSF4O95639 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4O95639 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.45■□□□□ 0.7
CPSF4O95639 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.45■□□□□ 0.7
CPSF4O95639 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4O95639 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4O95639 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4O95639 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.45■□□□□ 0.7
CPSF4O95639 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4O95639 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CPSF4O95639 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4O95639 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CPSF4O95639 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4O95639 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4O95639 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4O95639 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.44■□□□□ 0.7
CPSF4O95639 AL512408.1-201ENST00000569378 2000 ntBASIC19.44■□□□□ 0.7
CPSF4O95639 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4O95639 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
CPSF4O95639 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.44■□□□□ 0.7
CPSF4O95639 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4O95639 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4O95639 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4O95639 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4O95639 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4O95639 AC027612.3-201ENST00000413684 1047 ntBASIC19.44■□□□□ 0.7
CPSF4O95639 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.44■□□□□ 0.7
CPSF4O95639 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4O95639 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
CPSF4O95639 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CPSF4O95639 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.44■□□□□ 0.7
CPSF4O95639 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.44■□□□□ 0.7
CPSF4O95639 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CPSF4O95639 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4O95639 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.43■□□□□ 0.7
CPSF4O95639 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
CPSF4O95639 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4O95639 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4O95639 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4O95639 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4O95639 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4O95639 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4O95639 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.43■□□□□ 0.7
CPSF4O95639 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CPSF4O95639 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.43■□□□□ 0.7
CPSF4O95639 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4O95639 LINC02228-203ENST00000641970 1355 ntBASIC19.43■□□□□ 0.7
CPSF4O95639 KRT16P2-201ENST00000414673 1423 ntBASIC19.42■□□□□ 0.7
CPSF4O95639 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4O95639 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.42■□□□□ 0.7
CPSF4O95639 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4O95639 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4O95639 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CPSF4O95639 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.42■□□□□ 0.7
CPSF4O95639 AC112907.3-201ENST00000577781 2400 ntBASIC19.42■□□□□ 0.7
CPSF4O95639 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4O95639 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.42■□□□□ 0.7
CPSF4O95639 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4O95639 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4O95639 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4O95639 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4O95639 AC010141.2-201ENST00000452426 721 ntBASIC19.42■□□□□ 0.7
CPSF4O95639 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4O95639 SLC7A5P2-201ENST00000553010 536 ntBASIC19.42■□□□□ 0.7
CPSF4O95639 AC104187.1-201ENST00000607510 612 ntBASIC19.42■□□□□ 0.7
CPSF4O95639 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4O95639 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4O95639 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CPSF4O95639 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CPSF4O95639 AL121603.2-201ENST00000557373 2117 ntBASIC19.42■□□□□ 0.7
CPSF4O95639 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CPSF4O95639 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.42■□□□□ 0.7
CPSF4O95639 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CPSF4O95639 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4O95639 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4O95639 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.41■□□□□ 0.7
CPSF4O95639 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4O95639 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4O95639 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4O95639 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4O95639 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4O95639 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4O95639 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4O95639 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.41■□□□□ 0.7
CPSF4O95639 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.41■□□□□ 0.7
CPSF4O95639 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4O95639 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.41■□□□□ 0.7
CPSF4O95639 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4O95639 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4O95639 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4O95639 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CPSF4O95639 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.41■□□□□ 0.7
CPSF4O95639 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CPSF4O95639 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CPSF4O95639 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms