Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA1O95477 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA1O95477 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.12■□□□□ 0.33
ABCA1O95477 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.12■□□□□ 0.33
ABCA1O95477 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.12■□□□□ 0.33
ABCA1O95477 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA1O95477 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA1O95477 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA1O95477 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA1O95477 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.12■□□□□ 0.33
ABCA1O95477 AC127496.7-201ENST00000625110 1798 ntBASIC17.12■□□□□ 0.33
ABCA1O95477 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.12■□□□□ 0.33
ABCA1O95477 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA1O95477 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA1O95477 AC007322.3-201ENST00000426526 701 ntBASIC17.12■□□□□ 0.33
ABCA1O95477 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA1O95477 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC17.12■□□□□ 0.33
ABCA1O95477 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.12■□□□□ 0.33
ABCA1O95477 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.12■□□□□ 0.33
ABCA1O95477 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA1O95477 SOX15-203ENST00000570788 1093 ntBASIC17.12■□□□□ 0.33
ABCA1O95477 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.12■□□□□ 0.33
ABCA1O95477 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
ABCA1O95477 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
ABCA1O95477 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA1O95477 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA1O95477 AC092368.3-202ENST00000574180 1591 ntBASIC17.11■□□□□ 0.33
ABCA1O95477 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA1O95477 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
ABCA1O95477 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA1O95477 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA1O95477 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
ABCA1O95477 CDV3P1-201ENST00000471403 739 ntBASIC17.11■□□□□ 0.33
ABCA1O95477 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA1O95477 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA1O95477 MTDHP1-201ENST00000605323 784 ntBASIC17.11■□□□□ 0.33
ABCA1O95477 AL049637.2-201ENST00000641778 930 ntBASIC17.11■□□□□ 0.33
ABCA1O95477 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC17.11■□□□□ 0.33
ABCA1O95477 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA1O95477 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC17.11■□□□□ 0.33
ABCA1O95477 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA1O95477 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA1O95477 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA1O95477 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
ABCA1O95477 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA1O95477 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA1O95477 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17.11■□□□□ 0.33
ABCA1O95477 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC17.11■□□□□ 0.33
ABCA1O95477 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA1O95477 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA1O95477 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA1O95477 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.1■□□□□ 0.33
ABCA1O95477 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.1■□□□□ 0.33
ABCA1O95477 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.1■□□□□ 0.33
ABCA1O95477 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
ABCA1O95477 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.1■□□□□ 0.33
ABCA1O95477 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.1■□□□□ 0.33
ABCA1O95477 FAM21FP-204ENST00000608637 956 ntBASIC17.1■□□□□ 0.33
ABCA1O95477 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA1O95477 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA1O95477 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA1O95477 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
ABCA1O95477 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA1O95477 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA1O95477 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
ABCA1O95477 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA1O95477 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA1O95477 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA1O95477 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
ABCA1O95477 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA1O95477 KRT18P68-201ENST00000392293 1000 ntBASIC17.1■□□□□ 0.33
ABCA1O95477 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA1O95477 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.1■□□□□ 0.33
ABCA1O95477 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA1O95477 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA1O95477 AC007375.3-201ENST00000600936 2314 ntBASIC17.1■□□□□ 0.33
ABCA1O95477 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA1O95477 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
ABCA1O95477 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA1O95477 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
ABCA1O95477 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA1O95477 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA1O95477 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
ABCA1O95477 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA1O95477 AC010331.1-201ENST00000611423 582 ntBASIC17.09■□□□□ 0.33
ABCA1O95477 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA1O95477 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.09■□□□□ 0.33
ABCA1O95477 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA1O95477 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA1O95477 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA1O95477 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA1O95477 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA1O95477 AL137060.1-201ENST00000618151 2648 ntBASIC17.09■□□□□ 0.33
ABCA1O95477 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
ABCA1O95477 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.09■□□□□ 0.33
ABCA1O95477 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA1O95477 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA1O95477 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA1O95477 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ABCA1O95477 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms