Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC23.8■■□□□ 1.4
CTDNEP1O95476 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC23.8■■□□□ 1.4
CTDNEP1O95476 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC23.8■■□□□ 1.4
CTDNEP1O95476 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CTDNEP1O95476 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC23.8■■□□□ 1.4
CTDNEP1O95476 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC23.8■■□□□ 1.4
CTDNEP1O95476 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
CTDNEP1O95476 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC23.8■■□□□ 1.4
CTDNEP1O95476 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC23.79■■□□□ 1.4
CTDNEP1O95476 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC23.79■■□□□ 1.4
CTDNEP1O95476 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTDNEP1O95476 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTDNEP1O95476 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTDNEP1O95476 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC23.79■■□□□ 1.4
CTDNEP1O95476 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTDNEP1O95476 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTDNEP1O95476 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC23.79■■□□□ 1.4
CTDNEP1O95476 KRT18P11-201ENST00000435214 1283 ntBASIC23.79■■□□□ 1.4
CTDNEP1O95476 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
CTDNEP1O95476 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CTDNEP1O95476 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC23.79■■□□□ 1.4
CTDNEP1O95476 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC23.79■■□□□ 1.4
CTDNEP1O95476 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
CTDNEP1O95476 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CTDNEP1O95476 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CTDNEP1O95476 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC23.79■■□□□ 1.4
CTDNEP1O95476 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTDNEP1O95476 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTDNEP1O95476 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC23.79■■□□□ 1.4
CTDNEP1O95476 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CTDNEP1O95476 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
CTDNEP1O95476 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
CTDNEP1O95476 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTDNEP1O95476 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
CTDNEP1O95476 AC007322.4-201ENST00000509611 723 ntBASIC23.78■■□□□ 1.4
CTDNEP1O95476 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC23.78■■□□□ 1.4
CTDNEP1O95476 AC022517.1-201ENST00000592429 346 ntBASIC23.78■■□□□ 1.4
CTDNEP1O95476 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CTDNEP1O95476 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CTDNEP1O95476 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC23.78■■□□□ 1.4
CTDNEP1O95476 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTDNEP1O95476 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CTDNEP1O95476 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTDNEP1O95476 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CTDNEP1O95476 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
CTDNEP1O95476 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CTDNEP1O95476 KRT8P36-201ENST00000489121 1440 ntBASIC23.77■■□□□ 1.4
CTDNEP1O95476 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTDNEP1O95476 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
CTDNEP1O95476 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTDNEP1O95476 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CTDNEP1O95476 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTDNEP1O95476 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC23.77■■□□□ 1.4
CTDNEP1O95476 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTDNEP1O95476 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
CTDNEP1O95476 BMP1-204ENST00000397814 836 ntTSL 4 BASIC23.77■■□□□ 1.4
CTDNEP1O95476 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
CTDNEP1O95476 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
CTDNEP1O95476 AL591742.1-201ENST00000604433 565 ntBASIC23.77■■□□□ 1.4
CTDNEP1O95476 AC092437.1-201ENST00000624794 1048 ntBASIC23.77■■□□□ 1.4
CTDNEP1O95476 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC23.77■■□□□ 1.4
CTDNEP1O95476 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC23.77■■□□□ 1.4
CTDNEP1O95476 AC092720.2-201ENST00000602388 1665 ntBASIC23.76■■□□□ 1.39
CTDNEP1O95476 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
CTDNEP1O95476 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CTDNEP1O95476 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CTDNEP1O95476 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
CTDNEP1O95476 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC23.76■■□□□ 1.39
CTDNEP1O95476 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
CTDNEP1O95476 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CTDNEP1O95476 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CTDNEP1O95476 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CTDNEP1O95476 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CTDNEP1O95476 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
CTDNEP1O95476 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC23.75■■□□□ 1.39
CTDNEP1O95476 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC23.75■■□□□ 1.39
CTDNEP1O95476 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CTDNEP1O95476 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC23.75■■□□□ 1.39
CTDNEP1O95476 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
CTDNEP1O95476 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CTDNEP1O95476 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC23.75■■□□□ 1.39
CTDNEP1O95476 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC23.75■■□□□ 1.39
CTDNEP1O95476 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CTDNEP1O95476 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC23.75■■□□□ 1.39
CTDNEP1O95476 AC016769.1-201ENST00000409132 1010 ntBASIC23.75■■□□□ 1.39
CTDNEP1O95476 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CTDNEP1O95476 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CTDNEP1O95476 CDV3P1-201ENST00000471403 739 ntBASIC23.75■■□□□ 1.39
CTDNEP1O95476 FAM21FP-204ENST00000608637 956 ntBASIC23.75■■□□□ 1.39
CTDNEP1O95476 AC013268.1-206ENST00000638368 961 ntBASIC23.75■■□□□ 1.39
CTDNEP1O95476 AC112229.1-201ENST00000639295 961 ntBASIC23.75■■□□□ 1.39
CTDNEP1O95476 USP39-204ENST00000409766 2033 ntTSL 2 BASIC23.75■■□□□ 1.39
CTDNEP1O95476 AC112907.3-201ENST00000577781 2400 ntBASIC23.75■■□□□ 1.39
CTDNEP1O95476 AC068338.2-201ENST00000563278 1430 ntBASIC23.75■■□□□ 1.39
CTDNEP1O95476 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CTDNEP1O95476 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC23.75■■□□□ 1.39
CTDNEP1O95476 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC23.74■■□□□ 1.39
CTDNEP1O95476 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CTDNEP1O95476 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC23.74■■□□□ 1.39
CTDNEP1O95476 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms