Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.03■□□□□ 0.8
VPS4BO75351 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS4BO75351 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS4BO75351 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS4BO75351 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
VPS4BO75351 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
VPS4BO75351 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
VPS4BO75351 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
VPS4BO75351 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4BO75351 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4BO75351 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS4BO75351 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4BO75351 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.02■□□□□ 0.8
VPS4BO75351 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4BO75351 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.02■□□□□ 0.8
VPS4BO75351 AL121603.2-201ENST00000557373 2117 ntBASIC20.02■□□□□ 0.8
VPS4BO75351 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.02■□□□□ 0.8
VPS4BO75351 GPX1P1-201ENST00000388829 606 ntBASIC20.02■□□□□ 0.8
VPS4BO75351 KRT19P1-201ENST00000405746 1186 ntBASIC20.02■□□□□ 0.8
VPS4BO75351 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.02■□□□□ 0.8
VPS4BO75351 CROCCP5-201ENST00000436658 830 ntBASIC20.02■□□□□ 0.8
VPS4BO75351 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4BO75351 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4BO75351 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.02■□□□□ 0.8
VPS4BO75351 AC066615.1-201ENST00000640911 628 ntBASIC20.02■□□□□ 0.8
VPS4BO75351 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4BO75351 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4BO75351 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.02■□□□□ 0.8
VPS4BO75351 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
VPS4BO75351 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS4BO75351 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
VPS4BO75351 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.02■□□□□ 0.79
VPS4BO75351 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
VPS4BO75351 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4BO75351 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4BO75351 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
VPS4BO75351 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4BO75351 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.01■□□□□ 0.79
VPS4BO75351 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.01■□□□□ 0.79
VPS4BO75351 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4BO75351 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.01■□□□□ 0.79
VPS4BO75351 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4BO75351 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4BO75351 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4BO75351 AC011484.1-201ENST00000377652 1995 ntBASIC20.01■□□□□ 0.79
VPS4BO75351 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS4BO75351 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS4BO75351 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
VPS4BO75351 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS4BO75351 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20■□□□□ 0.79
VPS4BO75351 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20■□□□□ 0.79
VPS4BO75351 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
VPS4BO75351 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS4BO75351 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS4BO75351 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20■□□□□ 0.79
VPS4BO75351 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS4BO75351 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS4BO75351 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS4BO75351 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20■□□□□ 0.79
VPS4BO75351 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20■□□□□ 0.79
VPS4BO75351 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
VPS4BO75351 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20■□□□□ 0.79
VPS4BO75351 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
VPS4BO75351 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
VPS4BO75351 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS4BO75351 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS4BO75351 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
VPS4BO75351 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
VPS4BO75351 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS4BO75351 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.99■□□□□ 0.79
VPS4BO75351 AP004607.4-201ENST00000530158 1459 ntBASIC19.99■□□□□ 0.79
VPS4BO75351 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.99■□□□□ 0.79
VPS4BO75351 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS4BO75351 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS4BO75351 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS4BO75351 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.99■□□□□ 0.79
VPS4BO75351 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS4BO75351 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS4BO75351 KRT18P61-201ENST00000585825 1298 ntBASIC19.99■□□□□ 0.79
VPS4BO75351 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS4BO75351 AC053503.5-201ENST00000601508 636 ntBASIC19.99■□□□□ 0.79
VPS4BO75351 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.99■□□□□ 0.79
VPS4BO75351 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS4BO75351 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS4BO75351 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.99■□□□□ 0.79
VPS4BO75351 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
VPS4BO75351 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
VPS4BO75351 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS4BO75351 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS4BO75351 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS4BO75351 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS4BO75351 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS4BO75351 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
VPS4BO75351 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS4BO75351 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS4BO75351 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.98■□□□□ 0.79
VPS4BO75351 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS4BO75351 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS4BO75351 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS4BO75351 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms