Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
RNF40O75150 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RNF40O75150 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RNF40O75150 AC087289.5-201ENST00000586076 3175 ntBASIC21.97■■□□□ 1.11
RNF40O75150 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
RNF40O75150 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
RNF40O75150 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.96■■□□□ 1.11
RNF40O75150 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC21.96■■□□□ 1.11
RNF40O75150 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.96■■□□□ 1.11
RNF40O75150 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RNF40O75150 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RNF40O75150 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
RNF40O75150 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.96■■□□□ 1.11
RNF40O75150 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
RNF40O75150 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
RNF40O75150 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RNF40O75150 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
RNF40O75150 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
RNF40O75150 AC007322.1-201ENST00000426983 750 ntBASIC21.96■■□□□ 1.11
RNF40O75150 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.96■■□□□ 1.11
RNF40O75150 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
RNF40O75150 AC142086.2-201ENST00000569753 217 ntBASIC21.96■■□□□ 1.11
RNF40O75150 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
RNF40O75150 AC005181.1-201ENST00000604782 1256 ntBASIC21.96■■□□□ 1.11
RNF40O75150 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
RNF40O75150 AL020996.1-203ENST00000536896 2307 ntBASIC21.96■■□□□ 1.11
RNF40O75150 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
RNF40O75150 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.96■■□□□ 1.11
RNF40O75150 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
RNF40O75150 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.95■■□□□ 1.11
RNF40O75150 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
RNF40O75150 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RNF40O75150 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RNF40O75150 TSPY6P-201ENST00000448518 926 ntBASIC21.95■■□□□ 1.1
RNF40O75150 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
RNF40O75150 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
RNF40O75150 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.95■■□□□ 1.1
RNF40O75150 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
RNF40O75150 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.95■■□□□ 1.1
RNF40O75150 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.95■■□□□ 1.1
RNF40O75150 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.95■■□□□ 1.1
RNF40O75150 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
RNF40O75150 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
RNF40O75150 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
RNF40O75150 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
RNF40O75150 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RNF40O75150 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
RNF40O75150 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
RNF40O75150 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
RNF40O75150 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RNF40O75150 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
RNF40O75150 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
RNF40O75150 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
RNF40O75150 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.94■■□□□ 1.1
RNF40O75150 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
RNF40O75150 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.94■■□□□ 1.1
RNF40O75150 AP001160.3-201ENST00000601484 763 ntBASIC21.94■■□□□ 1.1
RNF40O75150 TMEM191A-211ENST00000637163 1067 ntBASIC21.94■■□□□ 1.1
RNF40O75150 MYCNOS-205ENST00000641950 531 ntBASIC21.94■■□□□ 1.1
RNF40O75150 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.94■■□□□ 1.1
RNF40O75150 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RNF40O75150 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.94■■□□□ 1.1
RNF40O75150 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
RNF40O75150 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RNF40O75150 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.94■■□□□ 1.1
RNF40O75150 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
RNF40O75150 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
RNF40O75150 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.94■■□□□ 1.1
RNF40O75150 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.94■■□□□ 1.1
RNF40O75150 GABARAPL3-202ENST00000624044 1851 ntBASIC21.94■■□□□ 1.1
RNF40O75150 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
RNF40O75150 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.93■■□□□ 1.1
RNF40O75150 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
RNF40O75150 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
RNF40O75150 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.93■■□□□ 1.1
RNF40O75150 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
RNF40O75150 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.93■■□□□ 1.1
RNF40O75150 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.93■■□□□ 1.1
RNF40O75150 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
RNF40O75150 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.92■■□□□ 1.1
RNF40O75150 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
RNF40O75150 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
RNF40O75150 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RNF40O75150 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
RNF40O75150 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
RNF40O75150 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RNF40O75150 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
RNF40O75150 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RNF40O75150 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.92■■□□□ 1.1
RNF40O75150 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RNF40O75150 GUSBP6-202ENST00000438529 1198 ntBASIC21.92■■□□□ 1.1
RNF40O75150 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.92■■□□□ 1.1
RNF40O75150 SLC7A5P2-201ENST00000553010 536 ntBASIC21.92■■□□□ 1.1
RNF40O75150 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.92■■□□□ 1.1
RNF40O75150 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RNF40O75150 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
RNF40O75150 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
RNF40O75150 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.92■■□□□ 1.1
RNF40O75150 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RNF40O75150 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms