Protein–RNA interactions for Protein: O43189

PHF1, PHD finger protein 1, humanhuman

Predicted RBP Predictions only

Length 567 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHF1O43189 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PHF1O43189 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PHF1O43189 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC17.61■□□□□ 0.41
PHF1O43189 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
PHF1O43189 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.61■□□□□ 0.41
PHF1O43189 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.61■□□□□ 0.41
PHF1O43189 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.61■□□□□ 0.41
PHF1O43189 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.61■□□□□ 0.41
PHF1O43189 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC17.61■□□□□ 0.41
PHF1O43189 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
PHF1O43189 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC17.61■□□□□ 0.41
PHF1O43189 UBE2DNL-204ENST00000602536 740 ntBASIC17.61■□□□□ 0.41
PHF1O43189 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.61■□□□□ 0.41
PHF1O43189 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.61■□□□□ 0.41
PHF1O43189 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC17.61■□□□□ 0.41
PHF1O43189 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PHF1O43189 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PHF1O43189 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PHF1O43189 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.6■□□□□ 0.41
PHF1O43189 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 PARP1-202ENST00000366792 553 ntTSL 3 BASIC17.6■□□□□ 0.41
PHF1O43189 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC17.6■□□□□ 0.41
PHF1O43189 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.6■□□□□ 0.41
PHF1O43189 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC17.6■□□□□ 0.41
PHF1O43189 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC17.6■□□□□ 0.41
PHF1O43189 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC17.6■□□□□ 0.41
PHF1O43189 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PHF1O43189 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
PHF1O43189 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PHF1O43189 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.59■□□□□ 0.41
PHF1O43189 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PHF1O43189 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.59■□□□□ 0.41
PHF1O43189 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.59■□□□□ 0.41
PHF1O43189 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PHF1O43189 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PHF1O43189 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PHF1O43189 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PHF1O43189 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PHF1O43189 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PHF1O43189 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.59■□□□□ 0.41
PHF1O43189 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
PHF1O43189 AC010141.2-201ENST00000452426 721 ntBASIC17.59■□□□□ 0.41
PHF1O43189 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PHF1O43189 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.59■□□□□ 0.41
PHF1O43189 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.59■□□□□ 0.41
PHF1O43189 AC138907.5-202ENST00000569484 235 ntBASIC17.59■□□□□ 0.41
PHF1O43189 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC17.59■□□□□ 0.41
PHF1O43189 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.59■□□□□ 0.41
PHF1O43189 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
PHF1O43189 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PHF1O43189 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PHF1O43189 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PHF1O43189 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PHF1O43189 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.59■□□□□ 0.41
PHF1O43189 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PHF1O43189 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PHF1O43189 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PHF1O43189 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PHF1O43189 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PHF1O43189 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.58■□□□□ 0.41
PHF1O43189 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
PHF1O43189 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
PHF1O43189 LINC01006-201ENST00000333319 2292 ntBASIC17.58■□□□□ 0.4
PHF1O43189 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
PHF1O43189 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC17.58■□□□□ 0.4
PHF1O43189 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PHF1O43189 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC17.58■□□□□ 0.4
PHF1O43189 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.58■□□□□ 0.4
PHF1O43189 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.58■□□□□ 0.4
PHF1O43189 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.58■□□□□ 0.4
PHF1O43189 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC17.58■□□□□ 0.4
PHF1O43189 EEF1DP3-203ENST00000566025 782 ntBASIC17.58■□□□□ 0.4
PHF1O43189 AP006294.2-201ENST00000641667 209 ntBASIC17.58■□□□□ 0.4
PHF1O43189 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PHF1O43189 AC003102.1-202ENST00000563394 1796 ntBASIC17.58■□□□□ 0.4
PHF1O43189 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PHF1O43189 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
PHF1O43189 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.57■□□□□ 0.4
PHF1O43189 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
PHF1O43189 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PHF1O43189 AC092667.1-201ENST00000434301 2586 ntBASIC17.57■□□□□ 0.4
PHF1O43189 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PHF1O43189 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PHF1O43189 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PHF1O43189 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms