Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.06■□□□□ 0.8
TMX2-CTNND1H3BSU7 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.06■□□□□ 0.8
TMX2-CTNND1H3BSU7 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.06■□□□□ 0.8
TMX2-CTNND1H3BSU7 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.06■□□□□ 0.8
TMX2-CTNND1H3BSU7 AC061975.6-201ENST00000579045 1553 ntBASIC20.06■□□□□ 0.8
TMX2-CTNND1H3BSU7 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.06■□□□□ 0.8
TMX2-CTNND1H3BSU7 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.06■□□□□ 0.8
TMX2-CTNND1H3BSU7 FAM21FP-204ENST00000608637 956 ntBASIC20.06■□□□□ 0.8
TMX2-CTNND1H3BSU7 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.06■□□□□ 0.8
TMX2-CTNND1H3BSU7 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TMX2-CTNND1H3BSU7 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TMX2-CTNND1H3BSU7 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TMX2-CTNND1H3BSU7 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
TMX2-CTNND1H3BSU7 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 AC245052.3-201ENST00000450182 901 ntBASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
TMX2-CTNND1H3BSU7 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TMX2-CTNND1H3BSU7 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TMX2-CTNND1H3BSU7 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
TMX2-CTNND1H3BSU7 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TMX2-CTNND1H3BSU7 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TMX2-CTNND1H3BSU7 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.03■□□□□ 0.8
TMX2-CTNND1H3BSU7 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TMX2-CTNND1H3BSU7 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.03■□□□□ 0.8
TMX2-CTNND1H3BSU7 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.03■□□□□ 0.8
TMX2-CTNND1H3BSU7 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TMX2-CTNND1H3BSU7 AC006058.3-201ENST00000606217 1069 ntBASIC20.03■□□□□ 0.8
TMX2-CTNND1H3BSU7 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.03■□□□□ 0.8
TMX2-CTNND1H3BSU7 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TMX2-CTNND1H3BSU7 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TMX2-CTNND1H3BSU7 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
TMX2-CTNND1H3BSU7 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.03■□□□□ 0.8
TMX2-CTNND1H3BSU7 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TMX2-CTNND1H3BSU7 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 GCSHP5-201ENST00000443090 522 ntBASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 AC026366.1-201ENST00000488803 879 ntBASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 UNC93B5-201ENST00000530315 699 ntBASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TMX2-CTNND1H3BSU7 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
TMX2-CTNND1H3BSU7 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.02■□□□□ 0.79
TMX2-CTNND1H3BSU7 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TMX2-CTNND1H3BSU7 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms