Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A5A8TX70 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
COL6A5A8TX70 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC16.1■□□□□ 0.17
COL6A5A8TX70 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.1■□□□□ 0.17
COL6A5A8TX70 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A5A8TX70 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC16.1■□□□□ 0.17
COL6A5A8TX70 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A5A8TX70 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A5A8TX70 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A5A8TX70 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.1■□□□□ 0.17
COL6A5A8TX70 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.1■□□□□ 0.17
COL6A5A8TX70 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.1■□□□□ 0.17
COL6A5A8TX70 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.1■□□□□ 0.17
COL6A5A8TX70 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
COL6A5A8TX70 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A5A8TX70 MOK-233ENST00000524214 1539 ntTSL 2 BASIC16.09■□□□□ 0.17
COL6A5A8TX70 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
COL6A5A8TX70 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A5A8TX70 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A5A8TX70 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A5A8TX70 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.09■□□□□ 0.17
COL6A5A8TX70 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A5A8TX70 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC16.09■□□□□ 0.17
COL6A5A8TX70 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
COL6A5A8TX70 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A5A8TX70 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A5A8TX70 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A5A8TX70 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.09■□□□□ 0.17
COL6A5A8TX70 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A5A8TX70 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC16.09■□□□□ 0.17
COL6A5A8TX70 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC16.08■□□□□ 0.17
COL6A5A8TX70 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.17
COL6A5A8TX70 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL6A5A8TX70 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
COL6A5A8TX70 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
COL6A5A8TX70 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
COL6A5A8TX70 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL6A5A8TX70 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL6A5A8TX70 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC16.08■□□□□ 0.16
COL6A5A8TX70 AC139530.3-201ENST00000620344 690 ntBASIC16.08■□□□□ 0.16
COL6A5A8TX70 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC16.08■□□□□ 0.16
COL6A5A8TX70 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
COL6A5A8TX70 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A5A8TX70 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A5A8TX70 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A5A8TX70 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
COL6A5A8TX70 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.07■□□□□ 0.16
COL6A5A8TX70 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC16.07■□□□□ 0.16
COL6A5A8TX70 RN7SL510P-201ENST00000581311 263 ntBASIC16.07■□□□□ 0.16
COL6A5A8TX70 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A5A8TX70 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A5A8TX70 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A5A8TX70 YBX1P2-201ENST00000489612 999 ntBASIC16.07■□□□□ 0.16
COL6A5A8TX70 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.07■□□□□ 0.16
COL6A5A8TX70 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.07■□□□□ 0.16
COL6A5A8TX70 AC139887.4-201ENST00000607877 719 ntBASIC16.07■□□□□ 0.16
COL6A5A8TX70 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A5A8TX70 AC138932.3-201ENST00000567634 1902 ntBASIC16.07■□□□□ 0.16
COL6A5A8TX70 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A5A8TX70 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A5A8TX70 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A5A8TX70 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A5A8TX70 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
COL6A5A8TX70 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A5A8TX70 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A5A8TX70 SLC25A1P4-201ENST00000567977 778 ntBASIC16.06■□□□□ 0.16
COL6A5A8TX70 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A5A8TX70 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
COL6A5A8TX70 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A5A8TX70 AP002982.1-201ENST00000492365 877 ntBASIC16.06■□□□□ 0.16
COL6A5A8TX70 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.06■□□□□ 0.16
COL6A5A8TX70 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A5A8TX70 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
COL6A5A8TX70 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A5A8TX70 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A5A8TX70 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A5A8TX70 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A5A8TX70 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A5A8TX70 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC16.05■□□□□ 0.16
COL6A5A8TX70 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC16.05■□□□□ 0.16
COL6A5A8TX70 AC092647.4-201ENST00000457211 535 ntBASIC16.05■□□□□ 0.16
COL6A5A8TX70 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC16.05■□□□□ 0.16
COL6A5A8TX70 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.05■□□□□ 0.16
COL6A5A8TX70 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC16.05■□□□□ 0.16
COL6A5A8TX70 CR769767.2-201ENST00000622735 460 ntBASIC16.05■□□□□ 0.16
COL6A5A8TX70 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC16.05■□□□□ 0.16
COL6A5A8TX70 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A5A8TX70 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A5A8TX70 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC16.05■□□□□ 0.16
COL6A5A8TX70 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A5A8TX70 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
COL6A5A8TX70 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.05■□□□□ 0.16
COL6A5A8TX70 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.05■□□□□ 0.16
COL6A5A8TX70 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A5A8TX70 AC124283.5-201ENST00000624661 1809 ntBASIC16.04■□□□□ 0.16
COL6A5A8TX70 AC026271.3-201ENST00000571884 352 ntBASIC16.04■□□□□ 0.16
COL6A5A8TX70 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.04■□□□□ 0.16
COL6A5A8TX70 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.04■□□□□ 0.16
COL6A5A8TX70 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.04■□□□□ 0.16
COL6A5A8TX70 KRT8P45-201ENST00000414328 1447 ntBASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms