Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CPSF4LA6NMK7 AL512408.1-201ENST00000569378 2000 ntBASIC18.86■□□□□ 0.61
CPSF4LA6NMK7 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.86■□□□□ 0.61
CPSF4LA6NMK7 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CPSF4LA6NMK7 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CPSF4LA6NMK7 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CPSF4LA6NMK7 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CPSF4LA6NMK7 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CPSF4LA6NMK7 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CPSF4LA6NMK7 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CPSF4LA6NMK7 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 AL121603.2-201ENST00000557373 2117 ntBASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 SLC7A5P2-201ENST00000553010 536 ntBASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 DUX4L2-201ENST00000561772 1275 ntBASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 DUX4L6-201ENST00000626483 1275 ntBASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 DUX4L1-201ENST00000627662 1275 ntBASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 DUX4L8-201ENST00000629013 1275 ntBASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 DUX4L3-201ENST00000630187 1275 ntBASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 DUX4L7-201ENST00000630678 1275 ntBASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 DUX4L5-201ENST00000630834 1275 ntBASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CPSF4LA6NMK7 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.84■□□□□ 0.61
CPSF4LA6NMK7 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CPSF4LA6NMK7 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.83■□□□□ 0.61
CPSF4LA6NMK7 AC112907.3-201ENST00000577781 2400 ntBASIC18.83■□□□□ 0.61
CPSF4LA6NMK7 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
CPSF4LA6NMK7 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CPSF4LA6NMK7 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CPSF4LA6NMK7 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CPSF4LA6NMK7 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CPSF4LA6NMK7 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CPSF4LA6NMK7 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CPSF4LA6NMK7 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CPSF4LA6NMK7 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CPSF4LA6NMK7 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CPSF4LA6NMK7 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.83■□□□□ 0.6
CPSF4LA6NMK7 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CPSF4LA6NMK7 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CPSF4LA6NMK7 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.83■□□□□ 0.6
CPSF4LA6NMK7 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC18.83■□□□□ 0.6
CPSF4LA6NMK7 AP001160.3-201ENST00000601484 763 ntBASIC18.83■□□□□ 0.6
CPSF4LA6NMK7 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CPSF4LA6NMK7 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.83■□□□□ 0.6
CPSF4LA6NMK7 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CPSF4LA6NMK7 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.83■□□□□ 0.6
CPSF4LA6NMK7 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CPSF4LA6NMK7 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CPSF4LA6NMK7 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 AC123595.1-201ENST00000440769 1046 ntBASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms