Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV1-2A0A0B4J238 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 AC053503.5-201ENST00000601508 636 ntBASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV1-2A0A0B4J238 AP000974.1-201ENST00000623909 2387 ntBASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 TNXA-203ENST00000507684 2038 ntBASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 BX842568.3-201ENST00000418104 571 ntBASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 EEF1DP3-203ENST00000566025 782 ntBASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV1-2A0A0B4J238 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRAV1-2A0A0B4J238 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRAV1-2A0A0B4J238 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRAV1-2A0A0B4J238 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRAV1-2A0A0B4J238 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TRAV1-2A0A0B4J238 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
TRAV1-2A0A0B4J238 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
TRAV1-2A0A0B4J238 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 TMEM179-206ENST00000616017 1645 ntBASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 AC061975.6-201ENST00000579045 1553 ntBASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV1-2A0A0B4J238 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV1-2A0A0B4J238 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms