Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 AC121338.2-201ENST00000622535 1744 ntBASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 SLC25A24-204ENST00000569674 2357 ntBASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 AC112907.3-201ENST00000577781 2400 ntBASIC27.55■■■□□ 2
SENP3-EIF4A1A0A087X0R7 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SENP3-EIF4A1A0A087X0R7 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC27.54■■■□□ 2
SENP3-EIF4A1A0A087X0R7 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SENP3-EIF4A1A0A087X0R7 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SENP3-EIF4A1A0A087X0R7 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC27.54■■■□□ 2
SENP3-EIF4A1A0A087X0R7 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC27.54■■■□□ 2
SENP3-EIF4A1A0A087X0R7 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC27.54■■■□□ 2
SENP3-EIF4A1A0A087X0R7 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SENP3-EIF4A1A0A087X0R7 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC27.54■■■□□ 2
SENP3-EIF4A1A0A087X0R7 ECEL1P3-201ENST00000427961 737 ntBASIC27.54■■■□□ 2
SENP3-EIF4A1A0A087X0R7 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC27.54■■■□□ 2
SENP3-EIF4A1A0A087X0R7 RPS2P4-201ENST00000476944 856 ntBASIC27.54■■■□□ 2
SENP3-EIF4A1A0A087X0R7 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SENP3-EIF4A1A0A087X0R7 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC27.54■■■□□ 2
SENP3-EIF4A1A0A087X0R7 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC27.54■■■□□ 2
SENP3-EIF4A1A0A087X0R7 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC27.54■■■□□ 2
SENP3-EIF4A1A0A087X0R7 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC27.53■■■□□ 2
SENP3-EIF4A1A0A087X0R7 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
SENP3-EIF4A1A0A087X0R7 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
SENP3-EIF4A1A0A087X0R7 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC27.53■■■□□ 2
SENP3-EIF4A1A0A087X0R7 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC27.53■■■□□ 2
SENP3-EIF4A1A0A087X0R7 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC27.53■■■□□ 2
SENP3-EIF4A1A0A087X0R7 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC27.53■■■□□ 2
SENP3-EIF4A1A0A087X0R7 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC27.53■■■□□ 2
SENP3-EIF4A1A0A087X0R7 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC27.53■■■□□ 2
SENP3-EIF4A1A0A087X0R7 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
SENP3-EIF4A1A0A087X0R7 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC27.53■■■□□ 2
SENP3-EIF4A1A0A087X0R7 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC27.53■■■□□ 2
SENP3-EIF4A1A0A087X0R7 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
SENP3-EIF4A1A0A087X0R7 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC27.53■■■□□ 2
SENP3-EIF4A1A0A087X0R7 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
SENP3-EIF4A1A0A087X0R7 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
SENP3-EIF4A1A0A087X0R7 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC27.52■■■□□ 2
SENP3-EIF4A1A0A087X0R7 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
SENP3-EIF4A1A0A087X0R7 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC27.52■■■□□ 2
SENP3-EIF4A1A0A087X0R7 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
SENP3-EIF4A1A0A087X0R7 RGMA-211ENST00000557420 989 ntTSL 3 BASIC27.52■■■□□ 2
SENP3-EIF4A1A0A087X0R7 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC27.52■■■□□ 2
SENP3-EIF4A1A0A087X0R7 WDR88-203ENST00000592765 651 ntTSL 5 BASIC27.52■■■□□ 2
SENP3-EIF4A1A0A087X0R7 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC27.52■■■□□ 2
SENP3-EIF4A1A0A087X0R7 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
SENP3-EIF4A1A0A087X0R7 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC27.52■■■□□ 2
SENP3-EIF4A1A0A087X0R7 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC27.52■■■□□ 2
SENP3-EIF4A1A0A087X0R7 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
SENP3-EIF4A1A0A087X0R7 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC27.52■■■□□ 2
SENP3-EIF4A1A0A087X0R7 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC27.51■■■□□ 2
SENP3-EIF4A1A0A087X0R7 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC27.51■■■□□ 2
SENP3-EIF4A1A0A087X0R7 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC27.51■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 FP700111.2-201ENST00000619190 1892 ntBASIC27.51■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC27.51■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC27.51■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC27.51■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 AC008175.2-201ENST00000612840 297 ntBASIC27.51■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 EXOC3-AS1-202ENST00000623673 1663 ntBASIC27.51■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 AC006128.1-201ENST00000624704 1661 ntBASIC27.51■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 AL121603.2-201ENST00000557373 2117 ntBASIC27.5■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC27.5■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC27.5■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC27.5■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC27.5■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 FEM1AP1-201ENST00000431297 1995 ntBASIC27.49■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC27.49■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC27.49■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 UQCRFS1P1-201ENST00000435169 820 ntBASIC27.49■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC27.49■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 AL121832.2-201ENST00000610979 668 ntBASIC27.49■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 FGF8-207ENST00000618991 856 ntTSL 3 BASIC27.49■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC27.49■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC27.49■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 ERF-202ENST00000440177 2032 ntTSL 2 BASIC27.48■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC27.48■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC27.48■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 TSPY6P-201ENST00000448518 926 ntBASIC27.48■■□□□ 1.99
SENP3-EIF4A1A0A087X0R7 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC27.48■■□□□ 1.99
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms