Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
PCDHA1Q9Y5I3 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
PCDHA1Q9Y5I3 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC23.58■■□□□ 1.36
PCDHA1Q9Y5I3 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
PCDHA1Q9Y5I3 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
PCDHA1Q9Y5I3 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PCDHA1Q9Y5I3 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PCDHA1Q9Y5I3 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
PCDHA1Q9Y5I3 RNA5SP413-201ENST00000516373 109 ntBASIC23.57■■□□□ 1.36
PCDHA1Q9Y5I3 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PCDHA1Q9Y5I3 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC23.57■■□□□ 1.36
PCDHA1Q9Y5I3 AC105020.6-201ENST00000621523 1217 ntBASIC23.57■■□□□ 1.36
PCDHA1Q9Y5I3 TBCB-214ENST00000629269 413 ntTSL 5 BASIC23.57■■□□□ 1.36
PCDHA1Q9Y5I3 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC23.57■■□□□ 1.36
PCDHA1Q9Y5I3 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PCDHA1Q9Y5I3 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PCDHA1Q9Y5I3 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PCDHA1Q9Y5I3 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 NME6-213ENST00000451657 871 ntTSL 2 BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHA1Q9Y5I3 STAC-204ENST00000457375 1366 ntTSL 2 BASIC23.55■■□□□ 1.36
PCDHA1Q9Y5I3 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
PCDHA1Q9Y5I3 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHA1Q9Y5I3 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC23.55■■□□□ 1.36
PCDHA1Q9Y5I3 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHA1Q9Y5I3 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHA1Q9Y5I3 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHA1Q9Y5I3 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHA1Q9Y5I3 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHA1Q9Y5I3 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC23.54■■□□□ 1.36
PCDHA1Q9Y5I3 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHA1Q9Y5I3 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHA1Q9Y5I3 PGM5P4-201ENST00000421970 445 ntBASIC23.54■■□□□ 1.36
PCDHA1Q9Y5I3 MIR4651-201ENST00000582622 73 ntBASIC23.54■■□□□ 1.36
PCDHA1Q9Y5I3 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC23.54■■□□□ 1.36
PCDHA1Q9Y5I3 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHA1Q9Y5I3 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHA1Q9Y5I3 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHA1Q9Y5I3 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHA1Q9Y5I3 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 AC027702.1-201ENST00000563810 1770 ntBASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 TSPY20P-201ENST00000450910 630 ntBASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 NXN-202ENST00000537628 1340 ntTSL 3 BASIC23.53■■□□□ 1.36
PCDHA1Q9Y5I3 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 ABHD17AP1-201ENST00000358206 933 ntBASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 GATS-209ENST00000454084 1030 ntTSL 3 BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA1Q9Y5I3 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.35
PCDHA1Q9Y5I3 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.52■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms