Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 AC231657.2-201ENST00000624556 255 ntBASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4BQ9Y4P1 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
ATG4BQ9Y4P1 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4BQ9Y4P1 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.41■□□□□ 0.7
ATG4BQ9Y4P1 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.41■□□□□ 0.7
ATG4BQ9Y4P1 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.41■□□□□ 0.7
ATG4BQ9Y4P1 AL162412.1-201ENST00000567129 965 ntBASIC19.41■□□□□ 0.7
ATG4BQ9Y4P1 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.41■□□□□ 0.7
ATG4BQ9Y4P1 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.41■□□□□ 0.7
ATG4BQ9Y4P1 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
ATG4BQ9Y4P1 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4BQ9Y4P1 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4BQ9Y4P1 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4BQ9Y4P1 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.41■□□□□ 0.7
ATG4BQ9Y4P1 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.41■□□□□ 0.7
ATG4BQ9Y4P1 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4BQ9Y4P1 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 AC007322.1-201ENST00000426983 750 ntBASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 FAM21FP-204ENST00000608637 956 ntBASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 AC073111.5-205ENST00000641717 521 ntBASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 AL121603.2-201ENST00000557373 2117 ntBASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.4■□□□□ 0.7
ATG4BQ9Y4P1 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 CDCA4P2-201ENST00000441182 718 ntBASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 FEM1AP1-201ENST00000431297 1995 ntBASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ATG4BQ9Y4P1 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ATG4BQ9Y4P1 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
ATG4BQ9Y4P1 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATG4BQ9Y4P1 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
ATG4BQ9Y4P1 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.37■□□□□ 0.69
ATG4BQ9Y4P1 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATG4BQ9Y4P1 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.37■□□□□ 0.69
ATG4BQ9Y4P1 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATG4BQ9Y4P1 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATG4BQ9Y4P1 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms