Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
RHBDD3Q9Y3P4 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RHBDD3Q9Y3P4 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
RHBDD3Q9Y3P4 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.92■□□□□ 0.46
RHBDD3Q9Y3P4 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RHBDD3Q9Y3P4 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
RHBDD3Q9Y3P4 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC17.92■□□□□ 0.46
RHBDD3Q9Y3P4 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
RHBDD3Q9Y3P4 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.92■□□□□ 0.46
RHBDD3Q9Y3P4 AC008175.2-201ENST00000612840 297 ntBASIC17.92■□□□□ 0.46
RHBDD3Q9Y3P4 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
RHBDD3Q9Y3P4 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
RHBDD3Q9Y3P4 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RHBDD3Q9Y3P4 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
RHBDD3Q9Y3P4 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RHBDD3Q9Y3P4 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 AC007225.1-201ENST00000566331 1836 ntBASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
RHBDD3Q9Y3P4 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 POU5F1P4-201ENST00000413175 1085 ntBASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 KRT18P14-201ENST00000534205 1250 ntBASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 AC138907.5-202ENST00000569484 235 ntBASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 AC104187.1-201ENST00000607510 612 ntBASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDD3Q9Y3P4 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
RHBDD3Q9Y3P4 AL162377.1-201ENST00000618844 1793 ntBASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 BID-203ENST00000399765 1879 ntTSL 2 BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 AC020907.5-201ENST00000624372 1936 ntBASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDD3Q9Y3P4 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
RHBDD3Q9Y3P4 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RHBDD3Q9Y3P4 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RHBDD3Q9Y3P4 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
RHBDD3Q9Y3P4 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RHBDD3Q9Y3P4 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RHBDD3Q9Y3P4 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RHBDD3Q9Y3P4 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RHBDD3Q9Y3P4 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
RHBDD3Q9Y3P4 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RHBDD3Q9Y3P4 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RHBDD3Q9Y3P4 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RHBDD3Q9Y3P4 COX20-201ENST00000366528 568 ntTSL 2 BASIC17.88■□□□□ 0.45
RHBDD3Q9Y3P4 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RHBDD3Q9Y3P4 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms