Protein–RNA interactions for Protein: Q9Y2I6

NINL, Ninein-like protein, humanhuman

Predictions only

Length 1,382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NINLQ9Y2I6 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
NINLQ9Y2I6 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
NINLQ9Y2I6 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
NINLQ9Y2I6 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC28.19■■■□□ 2.1
NINLQ9Y2I6 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
NINLQ9Y2I6 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC28.19■■■□□ 2.1
NINLQ9Y2I6 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC28.19■■■□□ 2.1
NINLQ9Y2I6 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
NINLQ9Y2I6 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC28.18■■■□□ 2.1
NINLQ9Y2I6 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NINLQ9Y2I6 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NINLQ9Y2I6 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NINLQ9Y2I6 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC28.18■■■□□ 2.1
NINLQ9Y2I6 MFF-205ENST00000354503 1085 ntTSL 2 BASIC28.18■■■□□ 2.1
NINLQ9Y2I6 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC28.18■■■□□ 2.1
NINLQ9Y2I6 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NINLQ9Y2I6 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC28.18■■■□□ 2.1
NINLQ9Y2I6 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NINLQ9Y2I6 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NINLQ9Y2I6 LINC00565-201ENST00000562710 2331 ntBASIC28.18■■■□□ 2.1
NINLQ9Y2I6 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
NINLQ9Y2I6 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
NINLQ9Y2I6 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
NINLQ9Y2I6 AC006058.3-201ENST00000606217 1069 ntBASIC28.17■■■□□ 2.1
NINLQ9Y2I6 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC28.17■■■□□ 2.1
NINLQ9Y2I6 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
NINLQ9Y2I6 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
NINLQ9Y2I6 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
NINLQ9Y2I6 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC28.17■■■□□ 2.1
NINLQ9Y2I6 FBXW4P1-201ENST00000426721 2239 ntBASIC28.17■■■□□ 2.1
NINLQ9Y2I6 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
NINLQ9Y2I6 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
NINLQ9Y2I6 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC28.16■■■□□ 2.1
NINLQ9Y2I6 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NINLQ9Y2I6 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NINLQ9Y2I6 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC28.16■■■□□ 2.1
NINLQ9Y2I6 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NINLQ9Y2I6 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC28.16■■■□□ 2.1
NINLQ9Y2I6 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NINLQ9Y2I6 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NINLQ9Y2I6 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC28.15■■■□□ 2.1
NINLQ9Y2I6 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
NINLQ9Y2I6 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC28.15■■■□□ 2.1
NINLQ9Y2I6 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC28.15■■■□□ 2.1
NINLQ9Y2I6 AC128676.1-201ENST00000454392 318 ntBASIC28.15■■■□□ 2.1
NINLQ9Y2I6 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
NINLQ9Y2I6 RPS2P4-201ENST00000476944 856 ntBASIC28.15■■■□□ 2.1
NINLQ9Y2I6 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
NINLQ9Y2I6 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC28.15■■■□□ 2.1
NINLQ9Y2I6 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
NINLQ9Y2I6 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
NINLQ9Y2I6 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
NINLQ9Y2I6 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC28.14■■■□□ 2.1
NINLQ9Y2I6 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC28.14■■■□□ 2.1
NINLQ9Y2I6 UNC93B4-201ENST00000505679 747 ntBASIC28.14■■■□□ 2.1
NINLQ9Y2I6 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC28.14■■■□□ 2.1
NINLQ9Y2I6 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
NINLQ9Y2I6 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
NINLQ9Y2I6 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.1
NINLQ9Y2I6 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.1
NINLQ9Y2I6 AL049796.1-201ENST00000565336 1766 ntBASIC28.14■■■□□ 2.1
NINLQ9Y2I6 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
NINLQ9Y2I6 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC28.14■■■□□ 2.1
NINLQ9Y2I6 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
NINLQ9Y2I6 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC28.14■■■□□ 2.1
NINLQ9Y2I6 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC28.14■■■□□ 2.1
NINLQ9Y2I6 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC28.14■■■□□ 2.1
NINLQ9Y2I6 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
NINLQ9Y2I6 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC28.14■■■□□ 2.09
NINLQ9Y2I6 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
NINLQ9Y2I6 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
NINLQ9Y2I6 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
NINLQ9Y2I6 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
NINLQ9Y2I6 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC28.13■■■□□ 2.09
NINLQ9Y2I6 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
NINLQ9Y2I6 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
NINLQ9Y2I6 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC28.13■■■□□ 2.09
NINLQ9Y2I6 KLF2-202ENST00000592003 564 ntTSL 3 BASIC28.13■■■□□ 2.09
NINLQ9Y2I6 MMD2-204ENST00000612910 778 ntTSL 5 BASIC28.13■■■□□ 2.09
NINLQ9Y2I6 AC073648.6-201ENST00000641589 218 ntBASIC28.13■■■□□ 2.09
NINLQ9Y2I6 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
NINLQ9Y2I6 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
NINLQ9Y2I6 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC28.13■■■□□ 2.09
NINLQ9Y2I6 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
NINLQ9Y2I6 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
NINLQ9Y2I6 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC28.13■■■□□ 2.09
NINLQ9Y2I6 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
NINLQ9Y2I6 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
NINLQ9Y2I6 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC28.12■■■□□ 2.09
NINLQ9Y2I6 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC28.12■■■□□ 2.09
NINLQ9Y2I6 BRWD1-AS2-201ENST00000603064 1028 ntBASIC28.12■■■□□ 2.09
NINLQ9Y2I6 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
NINLQ9Y2I6 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
NINLQ9Y2I6 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC28.12■■■□□ 2.09
NINLQ9Y2I6 AC027702.1-201ENST00000563810 1770 ntBASIC28.12■■■□□ 2.09
NINLQ9Y2I6 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
NINLQ9Y2I6 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC28.12■■■□□ 2.09
NINLQ9Y2I6 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
NINLQ9Y2I6 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
NINLQ9Y2I6 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms