Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.74■□□□□ 0.91
LHX3Q9UBR4 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LHX3Q9UBR4 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LHX3Q9UBR4 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
LHX3Q9UBR4 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.74■□□□□ 0.91
LHX3Q9UBR4 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
LHX3Q9UBR4 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.74■□□□□ 0.91
LHX3Q9UBR4 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.74■□□□□ 0.91
LHX3Q9UBR4 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LHX3Q9UBR4 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.74■□□□□ 0.91
LHX3Q9UBR4 MIR4758-201ENST00000577688 71 ntBASIC20.74■□□□□ 0.91
LHX3Q9UBR4 MIR2861-201ENST00000636310 90 ntBASIC20.74■□□□□ 0.91
LHX3Q9UBR4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LHX3Q9UBR4 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LHX3Q9UBR4 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LHX3Q9UBR4 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
LHX3Q9UBR4 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LHX3Q9UBR4 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LHX3Q9UBR4 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LHX3Q9UBR4 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.73■□□□□ 0.91
LHX3Q9UBR4 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.73■□□□□ 0.91
LHX3Q9UBR4 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LHX3Q9UBR4 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LHX3Q9UBR4 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
LHX3Q9UBR4 AC069152.1-201ENST00000438030 544 ntBASIC20.73■□□□□ 0.91
LHX3Q9UBR4 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.73■□□□□ 0.91
LHX3Q9UBR4 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.73■□□□□ 0.91
LHX3Q9UBR4 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.73■□□□□ 0.91
LHX3Q9UBR4 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
LHX3Q9UBR4 AC105020.6-201ENST00000621523 1217 ntBASIC20.73■□□□□ 0.91
LHX3Q9UBR4 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
LHX3Q9UBR4 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LHX3Q9UBR4 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.73■□□□□ 0.91
LHX3Q9UBR4 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LHX3Q9UBR4 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 LSM12P1-201ENST00000411836 588 ntBASIC20.72■□□□□ 0.91
LHX3Q9UBR4 AC073210.2-201ENST00000430369 194 ntBASIC20.72■□□□□ 0.91
LHX3Q9UBR4 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 AL589743.5-201ENST00000616611 1050 ntBASIC20.72■□□□□ 0.91
LHX3Q9UBR4 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
LHX3Q9UBR4 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.71■□□□□ 0.91
LHX3Q9UBR4 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LHX3Q9UBR4 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LHX3Q9UBR4 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.71■□□□□ 0.91
LHX3Q9UBR4 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
LHX3Q9UBR4 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LHX3Q9UBR4 AL356652.1-201ENST00000615962 565 ntBASIC20.71■□□□□ 0.91
LHX3Q9UBR4 AC133041.1-202ENST00000642053 222 ntBASIC20.71■□□□□ 0.91
LHX3Q9UBR4 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.71■□□□□ 0.91
LHX3Q9UBR4 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
LHX3Q9UBR4 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LHX3Q9UBR4 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.71■□□□□ 0.91
LHX3Q9UBR4 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.91
LHX3Q9UBR4 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LHX3Q9UBR4 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.7■□□□□ 0.9
LHX3Q9UBR4 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.7■□□□□ 0.9
LHX3Q9UBR4 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LHX3Q9UBR4 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LHX3Q9UBR4 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LHX3Q9UBR4 DUSP5P2-201ENST00000426873 1033 ntBASIC20.7■□□□□ 0.9
LHX3Q9UBR4 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.7■□□□□ 0.9
LHX3Q9UBR4 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.7■□□□□ 0.9
LHX3Q9UBR4 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LHX3Q9UBR4 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.7■□□□□ 0.9
LHX3Q9UBR4 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
LHX3Q9UBR4 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LHX3Q9UBR4 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 PGM5P4-201ENST00000421970 445 ntBASIC20.69■□□□□ 0.9
LHX3Q9UBR4 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 AC091874.3-201ENST00000512672 1195 ntBASIC20.69■□□□□ 0.9
LHX3Q9UBR4 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 MYC-209ENST00000641252 345 ntBASIC20.69■□□□□ 0.9
LHX3Q9UBR4 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LHX3Q9UBR4 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms