Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
MMP28Q9H239 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
MMP28Q9H239 NEFHP1-201ENST00000412845 2629 ntBASIC18.03■□□□□ 0.48
MMP28Q9H239 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
MMP28Q9H239 GTSE1-AS1-202ENST00000623117 1518 ntBASIC18.03■□□□□ 0.48
MMP28Q9H239 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
MMP28Q9H239 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MMP28Q9H239 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.03■□□□□ 0.48
MMP28Q9H239 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC18.03■□□□□ 0.48
MMP28Q9H239 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
MMP28Q9H239 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
MMP28Q9H239 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MMP28Q9H239 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MMP28Q9H239 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MMP28Q9H239 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC18.03■□□□□ 0.48
MMP28Q9H239 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC18.03■□□□□ 0.48
MMP28Q9H239 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
MMP28Q9H239 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.03■□□□□ 0.48
MMP28Q9H239 SYT6-210ENST00000641643 1587 ntBASIC18.03■□□□□ 0.48
MMP28Q9H239 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
MMP28Q9H239 AL512408.1-201ENST00000569378 2000 ntBASIC18.03■□□□□ 0.48
MMP28Q9H239 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
MMP28Q9H239 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
MMP28Q9H239 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
MMP28Q9H239 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
MMP28Q9H239 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MMP28Q9H239 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MMP28Q9H239 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
MMP28Q9H239 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.02■□□□□ 0.48
MMP28Q9H239 AC005837.3-201ENST00000612163 286 ntBASIC18.02■□□□□ 0.48
MMP28Q9H239 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC18.02■□□□□ 0.48
MMP28Q9H239 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
MMP28Q9H239 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.02■□□□□ 0.47
MMP28Q9H239 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.02■□□□□ 0.47
MMP28Q9H239 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
MMP28Q9H239 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
MMP28Q9H239 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.01■□□□□ 0.47
MMP28Q9H239 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
MMP28Q9H239 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MMP28Q9H239 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.01■□□□□ 0.47
MMP28Q9H239 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
MMP28Q9H239 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MMP28Q9H239 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MMP28Q9H239 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MMP28Q9H239 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC18.01■□□□□ 0.47
MMP28Q9H239 MIR3181-201ENST00000578512 73 ntBASIC18.01■□□□□ 0.47
MMP28Q9H239 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MMP28Q9H239 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.01■□□□□ 0.47
MMP28Q9H239 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.01■□□□□ 0.47
MMP28Q9H239 AC099778.1-201ENST00000568593 1911 ntBASIC18.01■□□□□ 0.47
MMP28Q9H239 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MMP28Q9H239 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MMP28Q9H239 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
MMP28Q9H239 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MMP28Q9H239 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MMP28Q9H239 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.01■□□□□ 0.47
MMP28Q9H239 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MMP28Q9H239 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.01■□□□□ 0.47
MMP28Q9H239 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MMP28Q9H239 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.01■□□□□ 0.47
MMP28Q9H239 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MMP28Q9H239 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
MMP28Q9H239 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
MMP28Q9H239 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
MMP28Q9H239 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MMP28Q9H239 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MMP28Q9H239 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MMP28Q9H239 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
MMP28Q9H239 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
MMP28Q9H239 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18■□□□□ 0.47
MMP28Q9H239 AC133637.1-201ENST00000624115 1537 ntBASIC18■□□□□ 0.47
MMP28Q9H239 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC18■□□□□ 0.47
MMP28Q9H239 PTCHD3P2-201ENST00000424937 1205 ntBASIC18■□□□□ 0.47
MMP28Q9H239 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18■□□□□ 0.47
MMP28Q9H239 AL138724.1-201ENST00000606771 1088 ntBASIC18■□□□□ 0.47
MMP28Q9H239 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18■□□□□ 0.47
MMP28Q9H239 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
MMP28Q9H239 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MMP28Q9H239 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MMP28Q9H239 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
MMP28Q9H239 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
MMP28Q9H239 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MMP28Q9H239 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
MMP28Q9H239 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18■□□□□ 0.47
MMP28Q9H239 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MMP28Q9H239 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
MMP28Q9H239 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MMP28Q9H239 AL162377.1-201ENST00000618844 1793 ntBASIC17.99■□□□□ 0.47
MMP28Q9H239 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
MMP28Q9H239 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.99■□□□□ 0.47
MMP28Q9H239 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
MMP28Q9H239 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MMP28Q9H239 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MMP28Q9H239 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
MMP28Q9H239 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MMP28Q9H239 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
MMP28Q9H239 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
MMP28Q9H239 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
MMP28Q9H239 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC17.99■□□□□ 0.47
MMP28Q9H239 SF1-220ENST00000626028 704 ntTSL 2 BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms