Protein–RNA interactions for Protein: Q9BSQ5

CCM2, Cerebral cavernous malformations 2 protein, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2Q9BSQ5 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCM2Q9BSQ5 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.2■□□□□ 0.82
CCM2Q9BSQ5 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 AC027702.1-201ENST00000563810 1770 ntBASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 AC083906.2-201ENST00000511578 360 ntBASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.19■□□□□ 0.82
CCM2Q9BSQ5 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCM2Q9BSQ5 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCM2Q9BSQ5 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCM2Q9BSQ5 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCM2Q9BSQ5 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCM2Q9BSQ5 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.18■□□□□ 0.82
CCM2Q9BSQ5 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.18■□□□□ 0.82
CCM2Q9BSQ5 AC105036.2-201ENST00000569468 176 ntBASIC20.18■□□□□ 0.82
CCM2Q9BSQ5 AC100791.3-201ENST00000617619 330 ntBASIC20.18■□□□□ 0.82
CCM2Q9BSQ5 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.18■□□□□ 0.82
CCM2Q9BSQ5 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCM2Q9BSQ5 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.18■□□□□ 0.82
CCM2Q9BSQ5 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.18■□□□□ 0.82
CCM2Q9BSQ5 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.18■□□□□ 0.82
CCM2Q9BSQ5 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCM2Q9BSQ5 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCM2Q9BSQ5 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.17■□□□□ 0.82
CCM2Q9BSQ5 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCM2Q9BSQ5 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.17■□□□□ 0.82
CCM2Q9BSQ5 ID1-201ENST00000376105 1233 ntBASIC20.17■□□□□ 0.82
CCM2Q9BSQ5 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.17■□□□□ 0.82
CCM2Q9BSQ5 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.17■□□□□ 0.82
CCM2Q9BSQ5 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CCM2Q9BSQ5 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.17■□□□□ 0.82
CCM2Q9BSQ5 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CCM2Q9BSQ5 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCM2Q9BSQ5 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCM2Q9BSQ5 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.17■□□□□ 0.82
CCM2Q9BSQ5 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCM2Q9BSQ5 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.17■□□□□ 0.82
CCM2Q9BSQ5 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCM2Q9BSQ5 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.17■□□□□ 0.82
CCM2Q9BSQ5 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 AC093787.1-201ENST00000450396 207 ntBASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 AC010980.2-201ENST00000587099 1412 ntBASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCM2Q9BSQ5 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 MCRIP2P1-201ENST00000394346 511 ntBASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 AL109923.1-201ENST00000618799 583 ntBASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.15■□□□□ 0.82
CCM2Q9BSQ5 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CCM2Q9BSQ5 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CCM2Q9BSQ5 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
CCM2Q9BSQ5 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms