Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHFRQ96EP1 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHFRQ96EP1 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHFRQ96EP1 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.97■□□□□ 0.95
CHFRQ96EP1 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHFRQ96EP1 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.97■□□□□ 0.95
CHFRQ96EP1 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHFRQ96EP1 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.97■□□□□ 0.95
CHFRQ96EP1 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHFRQ96EP1 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHFRQ96EP1 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CHFRQ96EP1 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHFRQ96EP1 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CHFRQ96EP1 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHFRQ96EP1 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.97■□□□□ 0.95
CHFRQ96EP1 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.97■□□□□ 0.95
CHFRQ96EP1 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.97■□□□□ 0.95
CHFRQ96EP1 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.97■□□□□ 0.95
CHFRQ96EP1 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.97■□□□□ 0.95
CHFRQ96EP1 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHFRQ96EP1 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.96■□□□□ 0.95
CHFRQ96EP1 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHFRQ96EP1 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHFRQ96EP1 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHFRQ96EP1 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.96■□□□□ 0.95
CHFRQ96EP1 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHFRQ96EP1 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.96■□□□□ 0.95
CHFRQ96EP1 GUSBP5-202ENST00000510805 1989 ntBASIC20.96■□□□□ 0.95
CHFRQ96EP1 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CHFRQ96EP1 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.96■□□□□ 0.95
CHFRQ96EP1 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.96■□□□□ 0.95
CHFRQ96EP1 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.96■□□□□ 0.95
CHFRQ96EP1 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.96■□□□□ 0.95
CHFRQ96EP1 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CHFRQ96EP1 MTDHP1-201ENST00000605323 784 ntBASIC20.96■□□□□ 0.95
CHFRQ96EP1 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHFRQ96EP1 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHFRQ96EP1 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHFRQ96EP1 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHFRQ96EP1 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.95■□□□□ 0.94
CHFRQ96EP1 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHFRQ96EP1 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHFRQ96EP1 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHFRQ96EP1 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.95■□□□□ 0.94
CHFRQ96EP1 MIR718-201ENST00000390190 70 ntBASIC20.95■□□□□ 0.94
CHFRQ96EP1 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHFRQ96EP1 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHFRQ96EP1 SNORA78-201ENST00000459373 127 ntBASIC20.95■□□□□ 0.94
CHFRQ96EP1 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
CHFRQ96EP1 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
CHFRQ96EP1 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.95■□□□□ 0.94
CHFRQ96EP1 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.95■□□□□ 0.94
CHFRQ96EP1 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.95■□□□□ 0.94
CHFRQ96EP1 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.95■□□□□ 0.94
CHFRQ96EP1 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.95■□□□□ 0.94
CHFRQ96EP1 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHFRQ96EP1 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHFRQ96EP1 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHFRQ96EP1 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHFRQ96EP1 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHFRQ96EP1 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHFRQ96EP1 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHFRQ96EP1 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CHFRQ96EP1 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHFRQ96EP1 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHFRQ96EP1 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
CHFRQ96EP1 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHFRQ96EP1 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHFRQ96EP1 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHFRQ96EP1 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHFRQ96EP1 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHFRQ96EP1 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHFRQ96EP1 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.94
CHFRQ96EP1 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHFRQ96EP1 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.94■□□□□ 0.94
CHFRQ96EP1 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHFRQ96EP1 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.94■□□□□ 0.94
CHFRQ96EP1 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CHFRQ96EP1 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.94■□□□□ 0.94
CHFRQ96EP1 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHFRQ96EP1 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHFRQ96EP1 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHFRQ96EP1 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHFRQ96EP1 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
CHFRQ96EP1 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHFRQ96EP1 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHFRQ96EP1 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHFRQ96EP1 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHFRQ96EP1 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHFRQ96EP1 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CHFRQ96EP1 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHFRQ96EP1 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
CHFRQ96EP1 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.93■□□□□ 0.94
CHFRQ96EP1 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.93■□□□□ 0.94
CHFRQ96EP1 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHFRQ96EP1 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
CHFRQ96EP1 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.93■□□□□ 0.94
CHFRQ96EP1 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHFRQ96EP1 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHFRQ96EP1 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms