Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TTC28Q96AY4 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TTC28Q96AY4 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TTC28Q96AY4 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TTC28Q96AY4 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC21.16■□□□□ 0.98
TTC28Q96AY4 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TTC28Q96AY4 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TTC28Q96AY4 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TTC28Q96AY4 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TTC28Q96AY4 KRT16P5-201ENST00000455284 522 ntBASIC21.16■□□□□ 0.98
TTC28Q96AY4 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.16■□□□□ 0.98
TTC28Q96AY4 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.16■□□□□ 0.98
TTC28Q96AY4 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TTC28Q96AY4 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TTC28Q96AY4 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TTC28Q96AY4 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.15■□□□□ 0.98
TTC28Q96AY4 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TTC28Q96AY4 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TTC28Q96AY4 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TTC28Q96AY4 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC21.15■□□□□ 0.98
TTC28Q96AY4 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TTC28Q96AY4 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TTC28Q96AY4 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC21.15■□□□□ 0.98
TTC28Q96AY4 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TTC28Q96AY4 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TTC28Q96AY4 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TTC28Q96AY4 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.98
TTC28Q96AY4 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.14■□□□□ 0.98
TTC28Q96AY4 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TTC28Q96AY4 AC117947.1-201ENST00000427448 529 ntBASIC21.14■□□□□ 0.97
TTC28Q96AY4 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TTC28Q96AY4 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TTC28Q96AY4 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TTC28Q96AY4 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TTC28Q96AY4 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
TTC28Q96AY4 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TTC28Q96AY4 NBPF21P-201ENST00000425093 1451 ntBASIC21.13■□□□□ 0.97
TTC28Q96AY4 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
TTC28Q96AY4 YBX1P2-201ENST00000489612 999 ntBASIC21.13■□□□□ 0.97
TTC28Q96AY4 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.13■□□□□ 0.97
TTC28Q96AY4 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.13■□□□□ 0.97
TTC28Q96AY4 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.13■□□□□ 0.97
TTC28Q96AY4 DUSP8P4-201ENST00000399538 1761 ntBASIC21.13■□□□□ 0.97
TTC28Q96AY4 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.13■□□□□ 0.97
TTC28Q96AY4 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TTC28Q96AY4 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
TTC28Q96AY4 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TTC28Q96AY4 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
TTC28Q96AY4 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC21.13■□□□□ 0.97
TTC28Q96AY4 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21.13■□□□□ 0.97
TTC28Q96AY4 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.13■□□□□ 0.97
TTC28Q96AY4 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
TTC28Q96AY4 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TTC28Q96AY4 ECEL1P2-202ENST00000465689 757 ntBASIC21.12■□□□□ 0.97
TTC28Q96AY4 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.12■□□□□ 0.97
TTC28Q96AY4 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC21.12■□□□□ 0.97
TTC28Q96AY4 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.12■□□□□ 0.97
TTC28Q96AY4 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TTC28Q96AY4 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
TTC28Q96AY4 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
TTC28Q96AY4 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.12■□□□□ 0.97
TTC28Q96AY4 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.12■□□□□ 0.97
TTC28Q96AY4 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TTC28Q96AY4 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC21.12■□□□□ 0.97
TTC28Q96AY4 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC21.12■□□□□ 0.97
TTC28Q96AY4 AC245052.3-201ENST00000450182 901 ntBASIC21.12■□□□□ 0.97
TTC28Q96AY4 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.12■□□□□ 0.97
TTC28Q96AY4 AC139887.4-201ENST00000607877 719 ntBASIC21.12■□□□□ 0.97
TTC28Q96AY4 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.12■□□□□ 0.97
TTC28Q96AY4 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TTC28Q96AY4 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
TTC28Q96AY4 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
TTC28Q96AY4 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.11■□□□□ 0.97
TTC28Q96AY4 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TTC28Q96AY4 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.11■□□□□ 0.97
TTC28Q96AY4 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TTC28Q96AY4 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TTC28Q96AY4 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.11■□□□□ 0.97
TTC28Q96AY4 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
TTC28Q96AY4 PCED1CP-201ENST00000419887 785 ntBASIC21.11■□□□□ 0.97
TTC28Q96AY4 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
TTC28Q96AY4 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TTC28Q96AY4 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TTC28Q96AY4 AC093458.2-201ENST00000623150 629 ntBASIC21.11■□□□□ 0.97
TTC28Q96AY4 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
TTC28Q96AY4 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
TTC28Q96AY4 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TTC28Q96AY4 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TTC28Q96AY4 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TTC28Q96AY4 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TTC28Q96AY4 AC092647.4-201ENST00000457211 535 ntBASIC21.1■□□□□ 0.97
TTC28Q96AY4 AC079089.2-201ENST00000531211 1277 ntBASIC21.1■□□□□ 0.97
TTC28Q96AY4 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.1■□□□□ 0.97
TTC28Q96AY4 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TTC28Q96AY4 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TTC28Q96AY4 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.1■□□□□ 0.97
TTC28Q96AY4 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.1■□□□□ 0.97
TTC28Q96AY4 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.1■□□□□ 0.97
TTC28Q96AY4 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TTC28Q96AY4 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms