Protein–RNA interactions for Protein: Q8TB33

LINC01560, Putative uncharacterized protein encoded by LINC01560, humanhuman

Predictions only

Length 94 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01560Q8TB33 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.82■□□□□ 0.44
LINC01560Q8TB33 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LINC01560Q8TB33 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LINC01560Q8TB33 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
LINC01560Q8TB33 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.81■□□□□ 0.44
LINC01560Q8TB33 AC233723.2-201ENST00000623798 2106 ntBASIC17.81■□□□□ 0.44
LINC01560Q8TB33 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LINC01560Q8TB33 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LINC01560Q8TB33 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC17.81■□□□□ 0.44
LINC01560Q8TB33 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC17.81■□□□□ 0.44
LINC01560Q8TB33 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LINC01560Q8TB33 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LINC01560Q8TB33 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.81■□□□□ 0.44
LINC01560Q8TB33 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LINC01560Q8TB33 MIR4497-201ENST00000583208 89 ntBASIC17.81■□□□□ 0.44
LINC01560Q8TB33 AC006557.6-201ENST00000623071 864 ntBASIC17.81■□□□□ 0.44
LINC01560Q8TB33 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC17.81■□□□□ 0.44
LINC01560Q8TB33 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LINC01560Q8TB33 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LINC01560Q8TB33 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LINC01560Q8TB33 AC087633.2-202ENST00000565166 1439 ntBASIC17.81■□□□□ 0.44
LINC01560Q8TB33 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 SNORA78-201ENST00000459373 127 ntBASIC17.8■□□□□ 0.44
LINC01560Q8TB33 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LINC01560Q8TB33 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 GGT1-206ENST00000404223 952 ntTSL 2 BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
LINC01560Q8TB33 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 GOLGA2P6-201ENST00000340929 2049 ntBASIC17.78■□□□□ 0.44
LINC01560Q8TB33 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.78■□□□□ 0.44
LINC01560Q8TB33 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LINC01560Q8TB33 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LINC01560Q8TB33 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LINC01560Q8TB33 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
LINC01560Q8TB33 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.77■□□□□ 0.44
LINC01560Q8TB33 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.77■□□□□ 0.44
LINC01560Q8TB33 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LINC01560Q8TB33 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC17.77■□□□□ 0.44
LINC01560Q8TB33 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms