Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
SMC1BQ8NDV3 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SMC1BQ8NDV3 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC24.54■■□□□ 1.52
SMC1BQ8NDV3 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SMC1BQ8NDV3 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
SMC1BQ8NDV3 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SMC1BQ8NDV3 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SMC1BQ8NDV3 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC24.54■■□□□ 1.52
SMC1BQ8NDV3 LINC01238-205ENST00000567549 1107 ntBASIC24.54■■□□□ 1.52
SMC1BQ8NDV3 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SMC1BQ8NDV3 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC24.54■■□□□ 1.52
SMC1BQ8NDV3 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC24.54■■□□□ 1.52
SMC1BQ8NDV3 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SMC1BQ8NDV3 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 ATP5G1P1-201ENST00000448724 379 ntBASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 FDX2-207ENST00000494368 584 ntTSL 4 BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC24.53■■□□□ 1.52
SMC1BQ8NDV3 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SMC1BQ8NDV3 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
SMC1BQ8NDV3 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC24.52■■□□□ 1.52
SMC1BQ8NDV3 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
SMC1BQ8NDV3 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC24.52■■□□□ 1.52
SMC1BQ8NDV3 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC24.52■■□□□ 1.52
SMC1BQ8NDV3 ISCU-203ENST00000431221 799 ntTSL 2 BASIC24.52■■□□□ 1.52
SMC1BQ8NDV3 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC24.52■■□□□ 1.52
SMC1BQ8NDV3 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC24.52■■□□□ 1.52
SMC1BQ8NDV3 CLN6-221ENST00000637494 765 ntTSL 5 BASIC24.52■■□□□ 1.52
SMC1BQ8NDV3 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SMC1BQ8NDV3 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SMC1BQ8NDV3 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
SMC1BQ8NDV3 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
SMC1BQ8NDV3 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
SMC1BQ8NDV3 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
SMC1BQ8NDV3 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC24.51■■□□□ 1.51
SMC1BQ8NDV3 AL450487.1-201ENST00000426799 995 ntBASIC24.51■■□□□ 1.51
SMC1BQ8NDV3 PP7080-204ENST00000510714 601 ntTSL 3 BASIC24.51■■□□□ 1.51
SMC1BQ8NDV3 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC24.51■■□□□ 1.51
SMC1BQ8NDV3 AC138932.3-201ENST00000567634 1902 ntBASIC24.51■■□□□ 1.51
SMC1BQ8NDV3 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC24.5■■□□□ 1.51
SMC1BQ8NDV3 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC24.5■■□□□ 1.51
SMC1BQ8NDV3 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
SMC1BQ8NDV3 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SMC1BQ8NDV3 PTPA-214ENST00000423100 988 ntTSL 2 BASIC24.5■■□□□ 1.51
SMC1BQ8NDV3 AC009947.2-201ENST00000444014 672 ntBASIC24.5■■□□□ 1.51
SMC1BQ8NDV3 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC24.5■■□□□ 1.51
SMC1BQ8NDV3 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC24.5■■□□□ 1.51
SMC1BQ8NDV3 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SMC1BQ8NDV3 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SMC1BQ8NDV3 LGALS8-AS1-201ENST00000487567 1457 ntBASIC24.5■■□□□ 1.51
SMC1BQ8NDV3 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SMC1BQ8NDV3 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
SMC1BQ8NDV3 AC027702.1-201ENST00000563810 1770 ntBASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 IPPK-202ENST00000375522 882 ntTSL 3 BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 DUSP5P1-201ENST00000441325 1139 ntBASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 AC022616.7-201ENST00000525383 220 ntBASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SMC1BQ8NDV3 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC24.48■■□□□ 1.51
SMC1BQ8NDV3 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SMC1BQ8NDV3 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SMC1BQ8NDV3 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SMC1BQ8NDV3 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SMC1BQ8NDV3 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC24.48■■□□□ 1.51
SMC1BQ8NDV3 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC24.48■■□□□ 1.51
SMC1BQ8NDV3 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC24.48■■□□□ 1.51
SMC1BQ8NDV3 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC24.48■■□□□ 1.51
SMC1BQ8NDV3 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SMC1BQ8NDV3 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SMC1BQ8NDV3 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
SMC1BQ8NDV3 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC24.47■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms