Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 MIR718-201ENST00000390190 70 ntBASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 REXO2-216ENST00000544196 452 ntTSL 3 BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
USHBP1Q8N6Y0 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC27.2■■□□□ 1.95
USHBP1Q8N6Y0 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC27.2■■□□□ 1.95
USHBP1Q8N6Y0 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.94
USHBP1Q8N6Y0 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
USHBP1Q8N6Y0 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC27.2■■□□□ 1.94
USHBP1Q8N6Y0 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC27.2■■□□□ 1.94
USHBP1Q8N6Y0 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC27.2■■□□□ 1.94
USHBP1Q8N6Y0 ISG20-202ENST00000379224 540 ntTSL 3 BASIC27.2■■□□□ 1.94
USHBP1Q8N6Y0 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC27.2■■□□□ 1.94
USHBP1Q8N6Y0 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC27.2■■□□□ 1.94
USHBP1Q8N6Y0 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC27.2■■□□□ 1.94
USHBP1Q8N6Y0 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC27.2■■□□□ 1.94
USHBP1Q8N6Y0 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC27.2■■□□□ 1.94
USHBP1Q8N6Y0 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC27.2■■□□□ 1.94
USHBP1Q8N6Y0 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
USHBP1Q8N6Y0 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
USHBP1Q8N6Y0 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
USHBP1Q8N6Y0 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
USHBP1Q8N6Y0 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
USHBP1Q8N6Y0 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
USHBP1Q8N6Y0 DYM-203ENST00000442713 2147 ntTSL 2 BASIC27.19■■□□□ 1.94
USHBP1Q8N6Y0 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
USHBP1Q8N6Y0 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
USHBP1Q8N6Y0 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC27.19■■□□□ 1.94
USHBP1Q8N6Y0 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
USHBP1Q8N6Y0 MTDHP1-201ENST00000605323 784 ntBASIC27.19■■□□□ 1.94
USHBP1Q8N6Y0 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC27.19■■□□□ 1.94
USHBP1Q8N6Y0 AL023875.1-201ENST00000640777 796 ntBASIC27.19■■□□□ 1.94
USHBP1Q8N6Y0 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC27.19■■□□□ 1.94
USHBP1Q8N6Y0 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
USHBP1Q8N6Y0 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
USHBP1Q8N6Y0 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC27.18■■□□□ 1.94
USHBP1Q8N6Y0 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
USHBP1Q8N6Y0 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
USHBP1Q8N6Y0 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
USHBP1Q8N6Y0 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
USHBP1Q8N6Y0 SERF2-207ENST00000409614 582 ntTSL 2 BASIC27.18■■□□□ 1.94
USHBP1Q8N6Y0 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
USHBP1Q8N6Y0 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC27.18■■□□□ 1.94
USHBP1Q8N6Y0 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC27.18■■□□□ 1.94
USHBP1Q8N6Y0 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC27.18■■□□□ 1.94
USHBP1Q8N6Y0 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC27.17■■□□□ 1.94
USHBP1Q8N6Y0 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
USHBP1Q8N6Y0 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
USHBP1Q8N6Y0 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC27.17■■□□□ 1.94
USHBP1Q8N6Y0 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC27.17■■□□□ 1.94
USHBP1Q8N6Y0 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC27.17■■□□□ 1.94
USHBP1Q8N6Y0 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC27.17■■□□□ 1.94
USHBP1Q8N6Y0 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
USHBP1Q8N6Y0 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC27.17■■□□□ 1.94
USHBP1Q8N6Y0 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 MDFI-202ENST00000373050 809 ntTSL 2 BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 GGT1-206ENST00000404223 952 ntTSL 2 BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 AL356652.1-201ENST00000615962 565 ntBASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 LSR-203ENST00000360798 1963 ntTSL 2 BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
USHBP1Q8N6Y0 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC27.15■■□□□ 1.94
USHBP1Q8N6Y0 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC27.15■■□□□ 1.94
USHBP1Q8N6Y0 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
USHBP1Q8N6Y0 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC27.15■■□□□ 1.94
USHBP1Q8N6Y0 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC27.15■■□□□ 1.94
USHBP1Q8N6Y0 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
USHBP1Q8N6Y0 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
USHBP1Q8N6Y0 LY6E-205ENST00000519611 635 ntTSL 3 BASIC27.15■■□□□ 1.94
USHBP1Q8N6Y0 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC27.15■■□□□ 1.94
USHBP1Q8N6Y0 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC27.15■■□□□ 1.94
USHBP1Q8N6Y0 MOK-233ENST00000524214 1539 ntTSL 2 BASIC27.15■■□□□ 1.94
USHBP1Q8N6Y0 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
USHBP1Q8N6Y0 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
USHBP1Q8N6Y0 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC27.15■■□□□ 1.94
USHBP1Q8N6Y0 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC27.15■■□□□ 1.94
USHBP1Q8N6Y0 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms