Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 RARRES2P10-201ENST00000564312 460 ntBASIC21.14■□□□□ 0.97
SLC44A3Q8N4M1 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.14■□□□□ 0.97
SLC44A3Q8N4M1 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.14■□□□□ 0.97
SLC44A3Q8N4M1 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.14■□□□□ 0.97
SLC44A3Q8N4M1 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.14■□□□□ 0.97
SLC44A3Q8N4M1 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.14■□□□□ 0.97
SLC44A3Q8N4M1 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
SLC44A3Q8N4M1 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SLC44A3Q8N4M1 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SLC44A3Q8N4M1 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SLC44A3Q8N4M1 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
SLC44A3Q8N4M1 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SLC44A3Q8N4M1 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SLC44A3Q8N4M1 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SLC44A3Q8N4M1 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.13■□□□□ 0.97
SLC44A3Q8N4M1 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SLC44A3Q8N4M1 AC080038.3-201ENST00000623346 1952 ntBASIC21.13■□□□□ 0.97
SLC44A3Q8N4M1 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SLC44A3Q8N4M1 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
SLC44A3Q8N4M1 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SLC44A3Q8N4M1 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.13■□□□□ 0.97
SLC44A3Q8N4M1 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SLC44A3Q8N4M1 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SLC44A3Q8N4M1 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 AC087633.2-202ENST00000565166 1439 ntBASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SLC44A3Q8N4M1 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SLC44A3Q8N4M1 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SLC44A3Q8N4M1 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SLC44A3Q8N4M1 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
SLC44A3Q8N4M1 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.11■□□□□ 0.97
SLC44A3Q8N4M1 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.11■□□□□ 0.97
SLC44A3Q8N4M1 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SLC44A3Q8N4M1 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SLC44A3Q8N4M1 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.11■□□□□ 0.97
SLC44A3Q8N4M1 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.11■□□□□ 0.97
SLC44A3Q8N4M1 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.11■□□□□ 0.97
SLC44A3Q8N4M1 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.11■□□□□ 0.97
SLC44A3Q8N4M1 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
SLC44A3Q8N4M1 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
SLC44A3Q8N4M1 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SLC44A3Q8N4M1 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SLC44A3Q8N4M1 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SLC44A3Q8N4M1 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SLC44A3Q8N4M1 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SLC44A3Q8N4M1 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.1■□□□□ 0.97
SLC44A3Q8N4M1 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.1■□□□□ 0.97
SLC44A3Q8N4M1 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SLC44A3Q8N4M1 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
SLC44A3Q8N4M1 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.1■□□□□ 0.97
SLC44A3Q8N4M1 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.1■□□□□ 0.97
SLC44A3Q8N4M1 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.1■□□□□ 0.97
SLC44A3Q8N4M1 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC21.1■□□□□ 0.97
SLC44A3Q8N4M1 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SLC44A3Q8N4M1 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SLC44A3Q8N4M1 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SLC44A3Q8N4M1 FAM99A-202ENST00000538190 1989 ntBASIC21.08■□□□□ 0.97
SLC44A3Q8N4M1 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SLC44A3Q8N4M1 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SLC44A3Q8N4M1 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SLC44A3Q8N4M1 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SLC44A3Q8N4M1 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.08■□□□□ 0.97
SLC44A3Q8N4M1 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms