Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC144BQ3MJ40 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC23.8■■□□□ 1.4
CCDC144BQ3MJ40 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC23.8■■□□□ 1.4
CCDC144BQ3MJ40 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
CCDC144BQ3MJ40 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
CCDC144BQ3MJ40 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC144BQ3MJ40 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC23.8■■□□□ 1.4
CCDC144BQ3MJ40 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC144BQ3MJ40 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC144BQ3MJ40 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
CCDC144BQ3MJ40 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC144BQ3MJ40 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC23.79■■□□□ 1.4
CCDC144BQ3MJ40 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC144BQ3MJ40 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
CCDC144BQ3MJ40 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
CCDC144BQ3MJ40 RARRES2P4-201ENST00000514074 484 ntBASIC23.79■■□□□ 1.4
CCDC144BQ3MJ40 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC23.79■■□□□ 1.4
CCDC144BQ3MJ40 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.79■■□□□ 1.4
CCDC144BQ3MJ40 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
CCDC144BQ3MJ40 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC23.79■■□□□ 1.4
CCDC144BQ3MJ40 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC23.79■■□□□ 1.4
CCDC144BQ3MJ40 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CCDC144BQ3MJ40 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC144BQ3MJ40 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC144BQ3MJ40 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC144BQ3MJ40 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC23.78■■□□□ 1.4
CCDC144BQ3MJ40 BET1L-207ENST00000529614 560 ntTSL 5 BASIC23.78■■□□□ 1.4
CCDC144BQ3MJ40 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC23.78■■□□□ 1.4
CCDC144BQ3MJ40 AC243732.1-201ENST00000612648 864 ntBASIC23.78■■□□□ 1.4
CCDC144BQ3MJ40 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC144BQ3MJ40 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC144BQ3MJ40 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC23.78■■□□□ 1.4
CCDC144BQ3MJ40 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC144BQ3MJ40 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC144BQ3MJ40 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC144BQ3MJ40 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC23.77■■□□□ 1.4
CCDC144BQ3MJ40 AC026471.6-201ENST00000622954 1905 ntBASIC23.77■■□□□ 1.4
CCDC144BQ3MJ40 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC23.77■■□□□ 1.4
CCDC144BQ3MJ40 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC144BQ3MJ40 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC144BQ3MJ40 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC23.77■■□□□ 1.4
CCDC144BQ3MJ40 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC23.77■■□□□ 1.4
CCDC144BQ3MJ40 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC144BQ3MJ40 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC144BQ3MJ40 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC144BQ3MJ40 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC144BQ3MJ40 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 AC091874.3-201ENST00000512672 1195 ntBASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC144BQ3MJ40 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 DUSP5P2-201ENST00000426873 1033 ntBASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 AC003102.1-202ENST00000563394 1796 ntBASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC144BQ3MJ40 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC23.74■■□□□ 1.39
CCDC144BQ3MJ40 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
CCDC144BQ3MJ40 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC144BQ3MJ40 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC144BQ3MJ40 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
CCDC144BQ3MJ40 ESRRAP1-201ENST00000400596 1257 ntBASIC23.74■■□□□ 1.39
CCDC144BQ3MJ40 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC23.74■■□□□ 1.39
CCDC144BQ3MJ40 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC23.74■■□□□ 1.39
CCDC144BQ3MJ40 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC144BQ3MJ40 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms