Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD3Q3KNS1 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
PTCHD3Q3KNS1 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD3Q3KNS1 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.05■□□□□ 0.8
PTCHD3Q3KNS1 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD3Q3KNS1 AL355802.2-201ENST00000402069 882 ntBASIC20.05■□□□□ 0.8
PTCHD3Q3KNS1 AC005181.1-201ENST00000604782 1256 ntBASIC20.05■□□□□ 0.8
PTCHD3Q3KNS1 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.05■□□□□ 0.8
PTCHD3Q3KNS1 AC010536.3-201ENST00000620306 533 ntBASIC20.05■□□□□ 0.8
PTCHD3Q3KNS1 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD3Q3KNS1 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.05■□□□□ 0.8
PTCHD3Q3KNS1 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD3Q3KNS1 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD3Q3KNS1 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD3Q3KNS1 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD3Q3KNS1 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD3Q3KNS1 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTCHD3Q3KNS1 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.04■□□□□ 0.8
PTCHD3Q3KNS1 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.04■□□□□ 0.8
PTCHD3Q3KNS1 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.04■□□□□ 0.8
PTCHD3Q3KNS1 AC243732.1-201ENST00000612648 864 ntBASIC20.04■□□□□ 0.8
PTCHD3Q3KNS1 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.04■□□□□ 0.8
PTCHD3Q3KNS1 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PTCHD3Q3KNS1 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.04■□□□□ 0.8
PTCHD3Q3KNS1 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.04■□□□□ 0.8
PTCHD3Q3KNS1 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTCHD3Q3KNS1 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.04■□□□□ 0.8
PTCHD3Q3KNS1 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTCHD3Q3KNS1 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTCHD3Q3KNS1 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 GPX1P1-201ENST00000388829 606 ntBASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD3Q3KNS1 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTCHD3Q3KNS1 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTCHD3Q3KNS1 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTCHD3Q3KNS1 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PTCHD3Q3KNS1 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.02■□□□□ 0.8
PTCHD3Q3KNS1 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.02■□□□□ 0.8
PTCHD3Q3KNS1 AC091799.1-201ENST00000422823 811 ntBASIC20.02■□□□□ 0.8
PTCHD3Q3KNS1 CNN2P6-201ENST00000439038 900 ntBASIC20.02■□□□□ 0.8
PTCHD3Q3KNS1 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.02■□□□□ 0.8
PTCHD3Q3KNS1 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTCHD3Q3KNS1 AC116050.2-201ENST00000612102 1779 ntBASIC20.02■□□□□ 0.8
PTCHD3Q3KNS1 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PTCHD3Q3KNS1 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
PTCHD3Q3KNS1 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.02■□□□□ 0.79
PTCHD3Q3KNS1 AC007225.1-201ENST00000566331 1836 ntBASIC20.02■□□□□ 0.79
PTCHD3Q3KNS1 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PTCHD3Q3KNS1 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 FEM1AP1-201ENST00000431297 1995 ntBASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD3Q3KNS1 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 AC083906.2-201ENST00000511578 360 ntBASIC20■□□□□ 0.79
PTCHD3Q3KNS1 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms