Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL7A1Q02388 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC14.84□□□□□ -0.03
COL7A1Q02388 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
COL7A1Q02388 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC14.84□□□□□ -0.03
COL7A1Q02388 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL7A1Q02388 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC14.84□□□□□ -0.03
COL7A1Q02388 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC14.83□□□□□ -0.03
COL7A1Q02388 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC14.83□□□□□ -0.03
COL7A1Q02388 DUX4L26-201ENST00000489078 1255 ntBASIC14.83□□□□□ -0.03
COL7A1Q02388 NARF-205ENST00000412079 1760 ntTSL 5 BASIC14.83□□□□□ -0.04
COL7A1Q02388 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC14.83□□□□□ -0.04
COL7A1Q02388 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL7A1Q02388 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL7A1Q02388 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL7A1Q02388 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
COL7A1Q02388 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC14.83□□□□□ -0.04
COL7A1Q02388 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
COL7A1Q02388 USF2-205ENST00000594064 1179 ntTSL 2 BASIC14.83□□□□□ -0.04
COL7A1Q02388 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL7A1Q02388 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL7A1Q02388 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL7A1Q02388 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL7A1Q02388 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC14.83□□□□□ -0.04
COL7A1Q02388 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL7A1Q02388 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC14.83□□□□□ -0.04
COL7A1Q02388 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 FAM197Y1-201ENST00000421178 764 ntBASIC14.82□□□□□ -0.04
COL7A1Q02388 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 SERP1-205ENST00000487153 657 ntTSL 4 BASIC14.82□□□□□ -0.04
COL7A1Q02388 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 CREM-210ENST00000374721 2020 ntTSL 5 BASIC14.82□□□□□ -0.04
COL7A1Q02388 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC14.82□□□□□ -0.04
COL7A1Q02388 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC14.82□□□□□ -0.04
COL7A1Q02388 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC14.82□□□□□ -0.04
COL7A1Q02388 METTL23-204ENST00000586752 904 ntTSL 2 BASIC14.82□□□□□ -0.04
COL7A1Q02388 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 GCA-201ENST00000233612 1694 ntTSL 2 BASIC14.82□□□□□ -0.04
COL7A1Q02388 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
COL7A1Q02388 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
COL7A1Q02388 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
COL7A1Q02388 ISCU-203ENST00000431221 799 ntTSL 2 BASIC14.82□□□□□ -0.04
COL7A1Q02388 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC14.82□□□□□ -0.04
COL7A1Q02388 AL121894.2-201ENST00000602977 491 ntBASIC14.82□□□□□ -0.04
COL7A1Q02388 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
COL7A1Q02388 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 AC124283.5-201ENST00000624661 1809 ntBASIC14.82□□□□□ -0.04
COL7A1Q02388 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL7A1Q02388 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC14.81□□□□□ -0.04
COL7A1Q02388 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
COL7A1Q02388 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC14.81□□□□□ -0.04
COL7A1Q02388 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL7A1Q02388 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL7A1Q02388 UNC93B2-201ENST00000285383 730 ntBASIC14.81□□□□□ -0.04
COL7A1Q02388 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC14.81□□□□□ -0.04
COL7A1Q02388 WWOX-216ENST00000569818 525 ntBASIC14.81□□□□□ -0.04
COL7A1Q02388 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
COL7A1Q02388 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL7A1Q02388 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
COL7A1Q02388 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC14.81□□□□□ -0.04
COL7A1Q02388 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL7A1Q02388 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL7A1Q02388 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL7A1Q02388 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC14.81□□□□□ -0.04
COL7A1Q02388 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC14.81□□□□□ -0.04
COL7A1Q02388 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC14.81□□□□□ -0.04
COL7A1Q02388 RPS15-203ENST00000586096 570 ntTSL 2 BASIC14.81□□□□□ -0.04
COL7A1Q02388 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC14.81□□□□□ -0.04
COL7A1Q02388 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC14.81□□□□□ -0.04
COL7A1Q02388 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL7A1Q02388 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL7A1Q02388 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC14.8□□□□□ -0.04
COL7A1Q02388 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL7A1Q02388 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL7A1Q02388 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC14.8□□□□□ -0.04
COL7A1Q02388 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC14.8□□□□□ -0.04
COL7A1Q02388 SLC25A3P1-201ENST00000443844 931 ntBASIC14.8□□□□□ -0.04
COL7A1Q02388 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC14.8□□□□□ -0.04
COL7A1Q02388 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC14.8□□□□□ -0.04
COL7A1Q02388 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC14.8□□□□□ -0.04
COL7A1Q02388 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL7A1Q02388 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL7A1Q02388 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms