Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SRP54P61011 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SRP54P61011 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SRP54P61011 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.25■□□□□ 0.83
SRP54P61011 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.25■□□□□ 0.83
SRP54P61011 EP400NL-214ENST00000641289 2402 ntBASIC20.25■□□□□ 0.83
SRP54P61011 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SRP54P61011 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SRP54P61011 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SRP54P61011 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.24■□□□□ 0.83
SRP54P61011 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.24■□□□□ 0.83
SRP54P61011 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SRP54P61011 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SRP54P61011 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SRP54P61011 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SRP54P61011 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SRP54P61011 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
SRP54P61011 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.24■□□□□ 0.83
SRP54P61011 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.24■□□□□ 0.83
SRP54P61011 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.24■□□□□ 0.83
SRP54P61011 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SRP54P61011 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SRP54P61011 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
SRP54P61011 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
SRP54P61011 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SRP54P61011 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.24■□□□□ 0.83
SRP54P61011 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.24■□□□□ 0.83
SRP54P61011 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.23■□□□□ 0.83
SRP54P61011 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.23■□□□□ 0.83
SRP54P61011 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
SRP54P61011 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SRP54P61011 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SRP54P61011 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SRP54P61011 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.23■□□□□ 0.83
SRP54P61011 KRT18P29-201ENST00000397031 1267 ntBASIC20.23■□□□□ 0.83
SRP54P61011 ESRRAP1-201ENST00000400596 1257 ntBASIC20.23■□□□□ 0.83
SRP54P61011 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SRP54P61011 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
SRP54P61011 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SRP54P61011 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.23■□□□□ 0.83
SRP54P61011 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SRP54P61011 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.23■□□□□ 0.83
SRP54P61011 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SRP54P61011 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SRP54P61011 ITM2C-210ENST00000620962 501 ntBASIC20.23■□□□□ 0.83
SRP54P61011 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
SRP54P61011 FBXW4P1-201ENST00000426721 2239 ntBASIC20.23■□□□□ 0.83
SRP54P61011 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SRP54P61011 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
SRP54P61011 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SRP54P61011 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
SRP54P61011 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
SRP54P61011 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SRP54P61011 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
SRP54P61011 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
SRP54P61011 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SRP54P61011 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SRP54P61011 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.22■□□□□ 0.83
SRP54P61011 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
SRP54P61011 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SRP54P61011 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.22■□□□□ 0.83
SRP54P61011 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.22■□□□□ 0.83
SRP54P61011 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.22■□□□□ 0.83
SRP54P61011 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.22■□□□□ 0.83
SRP54P61011 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SRP54P61011 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.22■□□□□ 0.83
SRP54P61011 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SRP54P61011 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SRP54P61011 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.22■□□□□ 0.83
SRP54P61011 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SRP54P61011 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SRP54P61011 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SRP54P61011 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
SRP54P61011 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SRP54P61011 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SRP54P61011 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
SRP54P61011 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SRP54P61011 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SRP54P61011 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SRP54P61011 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.21■□□□□ 0.83
SRP54P61011 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SRP54P61011 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.21■□□□□ 0.83
SRP54P61011 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.21■□□□□ 0.83
SRP54P61011 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.21■□□□□ 0.83
SRP54P61011 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SRP54P61011 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SRP54P61011 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SRP54P61011 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
SRP54P61011 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SRP54P61011 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SRP54P61011 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SRP54P61011 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SRP54P61011 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.21■□□□□ 0.83
SRP54P61011 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SRP54P61011 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.21■□□□□ 0.83
SRP54P61011 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SRP54P61011 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SRP54P61011 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SRP54P61011 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SRP54P61011 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms