Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
VCPP55072 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VCPP55072 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.92■■□□□ 1.1
VCPP55072 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VCPP55072 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VCPP55072 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.92■■□□□ 1.1
VCPP55072 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.92■■□□□ 1.1
VCPP55072 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.92■■□□□ 1.1
VCPP55072 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.92■■□□□ 1.1
VCPP55072 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.92■■□□□ 1.1
VCPP55072 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.92■■□□□ 1.1
VCPP55072 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.92■■□□□ 1.1
VCPP55072 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.92■■□□□ 1.1
VCPP55072 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VCPP55072 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VCPP55072 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VCPP55072 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VCPP55072 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VCPP55072 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VCPP55072 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.92■■□□□ 1.1
VCPP55072 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.92■■□□□ 1.1
VCPP55072 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
VCPP55072 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VCPP55072 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VCPP55072 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VCPP55072 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VCPP55072 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VCPP55072 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
VCPP55072 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VCPP55072 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VCPP55072 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.91■■□□□ 1.1
VCPP55072 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.91■■□□□ 1.1
VCPP55072 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VCPP55072 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.91■■□□□ 1.1
VCPP55072 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
VCPP55072 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC21.91■■□□□ 1.1
VCPP55072 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VCPP55072 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
VCPP55072 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
VCPP55072 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VCPP55072 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
VCPP55072 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.91■■□□□ 1.1
VCPP55072 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
VCPP55072 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VCPP55072 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VCPP55072 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VCPP55072 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
VCPP55072 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.9■■□□□ 1.1
VCPP55072 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.9■■□□□ 1.1
VCPP55072 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.9■■□□□ 1.1
VCPP55072 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
VCPP55072 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.9■■□□□ 1.1
VCPP55072 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
VCPP55072 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
VCPP55072 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
VCPP55072 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.89■■□□□ 1.1
VCPP55072 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.89■■□□□ 1.1
VCPP55072 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.89■■□□□ 1.1
VCPP55072 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.89■■□□□ 1.1
VCPP55072 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
VCPP55072 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VCPP55072 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VCPP55072 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
VCPP55072 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC21.89■■□□□ 1.09
VCPP55072 UBE2SP1-201ENST00000450587 669 ntBASIC21.89■■□□□ 1.09
VCPP55072 AC026366.1-201ENST00000488803 879 ntBASIC21.89■■□□□ 1.09
VCPP55072 KRT18P20-201ENST00000548986 1279 ntBASIC21.89■■□□□ 1.09
VCPP55072 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.89■■□□□ 1.09
VCPP55072 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.89■■□□□ 1.09
VCPP55072 AC053503.5-201ENST00000601508 636 ntBASIC21.89■■□□□ 1.09
VCPP55072 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.89■■□□□ 1.09
VCPP55072 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VCPP55072 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.89■■□□□ 1.09
VCPP55072 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VCPP55072 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.89■■□□□ 1.09
VCPP55072 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.89■■□□□ 1.09
VCPP55072 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VCPP55072 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
VCPP55072 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VCPP55072 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
VCPP55072 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.88■■□□□ 1.09
VCPP55072 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.88■■□□□ 1.09
VCPP55072 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
VCPP55072 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VCPP55072 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VCPP55072 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
VCPP55072 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
VCPP55072 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
VCPP55072 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
VCPP55072 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
VCPP55072 AL512625.2-201ENST00000417533 625 ntBASIC21.88■■□□□ 1.09
VCPP55072 AC091874.3-201ENST00000512672 1195 ntBASIC21.88■■□□□ 1.09
VCPP55072 KRT18P21-201ENST00000515767 1272 ntBASIC21.88■■□□□ 1.09
VCPP55072 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.88■■□□□ 1.09
VCPP55072 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.88■■□□□ 1.09
VCPP55072 MIR4497-201ENST00000583208 89 ntBASIC21.88■■□□□ 1.09
VCPP55072 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC21.88■■□□□ 1.09
VCPP55072 AC008694.1-202ENST00000636953 945 ntBASIC21.88■■□□□ 1.09
VCPP55072 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VCPP55072 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms