Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
HNF4AP41235 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.86■□□□□ 0.77
HNF4AP41235 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.86■□□□□ 0.77
HNF4AP41235 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.86■□□□□ 0.77
HNF4AP41235 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HNF4AP41235 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.86■□□□□ 0.77
HNF4AP41235 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.86■□□□□ 0.77
HNF4AP41235 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.86■□□□□ 0.77
HNF4AP41235 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HNF4AP41235 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
HNF4AP41235 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
HNF4AP41235 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
HNF4AP41235 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.86■□□□□ 0.77
HNF4AP41235 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
HNF4AP41235 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HNF4AP41235 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.85■□□□□ 0.77
HNF4AP41235 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.85■□□□□ 0.77
HNF4AP41235 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
HNF4AP41235 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HNF4AP41235 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
HNF4AP41235 LINC01521-201ENST00000504184 1943 ntBASIC19.85■□□□□ 0.77
HNF4AP41235 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.85■□□□□ 0.77
HNF4AP41235 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HNF4AP41235 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.85■□□□□ 0.77
HNF4AP41235 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.85■□□□□ 0.77
HNF4AP41235 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.85■□□□□ 0.77
HNF4AP41235 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.85■□□□□ 0.77
HNF4AP41235 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.85■□□□□ 0.77
HNF4AP41235 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.85■□□□□ 0.77
HNF4AP41235 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HNF4AP41235 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HNF4AP41235 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HNF4AP41235 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HNF4AP41235 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HNF4AP41235 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HNF4AP41235 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
HNF4AP41235 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
HNF4AP41235 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.84■□□□□ 0.77
HNF4AP41235 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.84■□□□□ 0.77
HNF4AP41235 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.84■□□□□ 0.77
HNF4AP41235 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.84■□□□□ 0.77
HNF4AP41235 AC011767.1-201ENST00000617410 1153 ntBASIC19.84■□□□□ 0.77
HNF4AP41235 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.84■□□□□ 0.77
HNF4AP41235 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
HNF4AP41235 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
HNF4AP41235 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HNF4AP41235 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.84■□□□□ 0.77
HNF4AP41235 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HNF4AP41235 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HNF4AP41235 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HNF4AP41235 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HNF4AP41235 AL157384.1-201ENST00000445995 2473 ntBASIC19.83■□□□□ 0.77
HNF4AP41235 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
HNF4AP41235 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.83■□□□□ 0.77
HNF4AP41235 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.83■□□□□ 0.77
HNF4AP41235 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.83■□□□□ 0.77
HNF4AP41235 AC004911.1-201ENST00000416316 871 ntBASIC19.83■□□□□ 0.77
HNF4AP41235 AC091799.1-201ENST00000422823 811 ntBASIC19.83■□□□□ 0.77
HNF4AP41235 AC006015.1-201ENST00000429970 570 ntBASIC19.83■□□□□ 0.77
HNF4AP41235 KRT18P11-201ENST00000435214 1283 ntBASIC19.83■□□□□ 0.77
HNF4AP41235 AC092666.2-201ENST00000613287 246 ntBASIC19.83■□□□□ 0.77
HNF4AP41235 AC092437.1-201ENST00000624794 1048 ntBASIC19.83■□□□□ 0.77
HNF4AP41235 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HNF4AP41235 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.83■□□□□ 0.76
HNF4AP41235 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HNF4AP41235 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HNF4AP41235 AC027702.1-201ENST00000563810 1770 ntBASIC19.83■□□□□ 0.76
HNF4AP41235 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HNF4AP41235 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HNF4AP41235 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
HNF4AP41235 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
HNF4AP41235 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.82■□□□□ 0.76
HNF4AP41235 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
HNF4AP41235 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HNF4AP41235 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.82■□□□□ 0.76
HNF4AP41235 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.82■□□□□ 0.76
HNF4AP41235 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
HNF4AP41235 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.82■□□□□ 0.76
HNF4AP41235 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.82■□□□□ 0.76
HNF4AP41235 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
HNF4AP41235 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HNF4AP41235 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HNF4AP41235 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HNF4AP41235 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.82■□□□□ 0.76
HNF4AP41235 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.82■□□□□ 0.76
HNF4AP41235 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HNF4AP41235 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
HNF4AP41235 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HNF4AP41235 FP700111.2-201ENST00000619190 1892 ntBASIC19.82■□□□□ 0.76
HNF4AP41235 GABARAPL3-202ENST00000624044 1851 ntBASIC19.82■□□□□ 0.76
HNF4AP41235 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HNF4AP41235 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
HNF4AP41235 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.81■□□□□ 0.76
HNF4AP41235 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.81■□□□□ 0.76
HNF4AP41235 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HNF4AP41235 AP005212.1-201ENST00000581547 1997 ntBASIC19.81■□□□□ 0.76
HNF4AP41235 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.81■□□□□ 0.76
HNF4AP41235 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HNF4AP41235 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HNF4AP41235 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms