Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
RFC3P40938 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RFC3P40938 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFC3P40938 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFC3P40938 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFC3P40938 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RFC3P40938 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFC3P40938 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFC3P40938 MCRIP2P1-201ENST00000394346 511 ntBASIC18.76■□□□□ 0.59
RFC3P40938 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.76■□□□□ 0.59
RFC3P40938 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.76■□□□□ 0.59
RFC3P40938 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
RFC3P40938 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.76■□□□□ 0.59
RFC3P40938 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.76■□□□□ 0.59
RFC3P40938 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.76■□□□□ 0.59
RFC3P40938 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.76■□□□□ 0.59
RFC3P40938 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFC3P40938 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFC3P40938 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
RFC3P40938 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.76■□□□□ 0.59
RFC3P40938 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFC3P40938 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFC3P40938 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFC3P40938 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFC3P40938 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
RFC3P40938 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFC3P40938 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFC3P40938 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
RFC3P40938 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFC3P40938 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFC3P40938 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.75■□□□□ 0.59
RFC3P40938 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFC3P40938 KRT18P29-201ENST00000397031 1267 ntBASIC18.75■□□□□ 0.59
RFC3P40938 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.75■□□□□ 0.59
RFC3P40938 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.75■□□□□ 0.59
RFC3P40938 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFC3P40938 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RFC3P40938 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFC3P40938 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFC3P40938 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RFC3P40938 AC116050.2-201ENST00000612102 1779 ntBASIC18.75■□□□□ 0.59
RFC3P40938 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
RFC3P40938 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.75■□□□□ 0.59
RFC3P40938 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFC3P40938 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.75■□□□□ 0.59
RFC3P40938 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFC3P40938 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.74■□□□□ 0.59
RFC3P40938 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RFC3P40938 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFC3P40938 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
RFC3P40938 AC007375.3-201ENST00000600936 2314 ntBASIC18.74■□□□□ 0.59
RFC3P40938 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFC3P40938 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFC3P40938 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.74■□□□□ 0.59
RFC3P40938 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFC3P40938 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFC3P40938 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.74■□□□□ 0.59
RFC3P40938 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
RFC3P40938 ESRRAP1-201ENST00000400596 1257 ntBASIC18.74■□□□□ 0.59
RFC3P40938 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.74■□□□□ 0.59
RFC3P40938 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.74■□□□□ 0.59
RFC3P40938 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.74■□□□□ 0.59
RFC3P40938 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
RFC3P40938 AL589743.5-201ENST00000616611 1050 ntBASIC18.74■□□□□ 0.59
RFC3P40938 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFC3P40938 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RFC3P40938 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFC3P40938 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RFC3P40938 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.74■□□□□ 0.59
RFC3P40938 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
RFC3P40938 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFC3P40938 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFC3P40938 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.73■□□□□ 0.59
RFC3P40938 PKD1P6-201ENST00000343738 4769 ntBASIC18.73■□□□□ 0.59
RFC3P40938 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFC3P40938 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RFC3P40938 KRT18P68-201ENST00000392293 1000 ntBASIC18.73■□□□□ 0.59
RFC3P40938 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.73■□□□□ 0.59
RFC3P40938 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.73■□□□□ 0.59
RFC3P40938 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.73■□□□□ 0.59
RFC3P40938 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RFC3P40938 AC008687.6-201ENST00000596318 630 ntBASIC18.73■□□□□ 0.59
RFC3P40938 AC100791.3-201ENST00000617619 330 ntBASIC18.73■□□□□ 0.59
RFC3P40938 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFC3P40938 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
RFC3P40938 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.73■□□□□ 0.59
RFC3P40938 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RFC3P40938 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
RFC3P40938 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.73■□□□□ 0.59
RFC3P40938 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RFC3P40938 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFC3P40938 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFC3P40938 CYP21A1P-202ENST00000354927 1481 ntBASIC18.72■□□□□ 0.59
RFC3P40938 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
RFC3P40938 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFC3P40938 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.72■□□□□ 0.59
RFC3P40938 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFC3P40938 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFC3P40938 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RFC3P40938 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms