Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC26.18■■□□□ 1.78
COL5A3P25940 Six3os1_6.1-201ENST00000620790 196 ntBASIC26.18■■□□□ 1.78
COL5A3P25940 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC26.18■■□□□ 1.78
COL5A3P25940 AC097493.4-201ENST00000641197 219 ntBASIC26.18■■□□□ 1.78
COL5A3P25940 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL5A3P25940 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
COL5A3P25940 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC26.17■■□□□ 1.78
COL5A3P25940 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL5A3P25940 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
COL5A3P25940 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
COL5A3P25940 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
COL5A3P25940 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
COL5A3P25940 HES2-206ENST00000489730 730 ntTSL 2 BASIC26.17■■□□□ 1.78
COL5A3P25940 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC26.17■■□□□ 1.78
COL5A3P25940 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC26.17■■□□□ 1.78
COL5A3P25940 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL5A3P25940 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC26.17■■□□□ 1.78
COL5A3P25940 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC26.17■■□□□ 1.78
COL5A3P25940 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL5A3P25940 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL5A3P25940 KRT17P2-201ENST00000300992 1314 ntBASIC26.17■■□□□ 1.78
COL5A3P25940 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL5A3P25940 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC26.17■■□□□ 1.78
COL5A3P25940 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC26.16■■□□□ 1.78
COL5A3P25940 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC26.16■■□□□ 1.78
COL5A3P25940 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
COL5A3P25940 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
COL5A3P25940 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
COL5A3P25940 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC26.16■■□□□ 1.78
COL5A3P25940 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
COL5A3P25940 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
COL5A3P25940 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC26.16■■□□□ 1.78
COL5A3P25940 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC26.16■■□□□ 1.78
COL5A3P25940 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC26.16■■□□□ 1.78
COL5A3P25940 RN7SL850P-201ENST00000579959 291 ntBASIC26.16■■□□□ 1.78
COL5A3P25940 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
COL5A3P25940 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
COL5A3P25940 AC133561.5-201ENST00000635547 218 ntBASIC26.16■■□□□ 1.78
COL5A3P25940 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
COL5A3P25940 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC26.16■■□□□ 1.78
COL5A3P25940 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
COL5A3P25940 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
COL5A3P25940 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
COL5A3P25940 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
COL5A3P25940 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC26.15■■□□□ 1.78
COL5A3P25940 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC26.15■■□□□ 1.78
COL5A3P25940 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC26.15■■□□□ 1.78
COL5A3P25940 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC26.15■■□□□ 1.78
COL5A3P25940 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
COL5A3P25940 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
COL5A3P25940 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC26.15■■□□□ 1.78
COL5A3P25940 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC26.15■■□□□ 1.78
COL5A3P25940 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
COL5A3P25940 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
COL5A3P25940 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
COL5A3P25940 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC26.14■■□□□ 1.78
COL5A3P25940 THEM4-205ENST00000489410 643 ntTSL 2 BASIC26.14■■□□□ 1.78
COL5A3P25940 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
COL5A3P25940 CABP2-204ENST00000636477 941 ntTSL 5 BASIC26.14■■□□□ 1.78
COL5A3P25940 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
COL5A3P25940 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
COL5A3P25940 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC26.14■■□□□ 1.78
COL5A3P25940 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
COL5A3P25940 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
COL5A3P25940 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.77
COL5A3P25940 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.77
COL5A3P25940 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC26.14■■□□□ 1.77
COL5A3P25940 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
COL5A3P25940 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
COL5A3P25940 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC26.14■■□□□ 1.77
COL5A3P25940 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC26.14■■□□□ 1.77
COL5A3P25940 AC006557.6-201ENST00000623071 864 ntBASIC26.14■■□□□ 1.77
COL5A3P25940 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC26.13■■□□□ 1.77
COL5A3P25940 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
COL5A3P25940 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.13■■□□□ 1.77
COL5A3P25940 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
COL5A3P25940 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
COL5A3P25940 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
COL5A3P25940 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC26.13■■□□□ 1.77
COL5A3P25940 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
COL5A3P25940 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC26.13■■□□□ 1.77
COL5A3P25940 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC26.13■■□□□ 1.77
COL5A3P25940 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
COL5A3P25940 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC26.13■■□□□ 1.77
COL5A3P25940 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
COL5A3P25940 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
COL5A3P25940 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
COL5A3P25940 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
COL5A3P25940 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
COL5A3P25940 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
COL5A3P25940 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
COL5A3P25940 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC26.12■■□□□ 1.77
COL5A3P25940 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC26.12■■□□□ 1.77
COL5A3P25940 PRKY-204ENST00000533551 1019 ntBASIC26.12■■□□□ 1.77
COL5A3P25940 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC26.12■■□□□ 1.77
COL5A3P25940 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
COL5A3P25940 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
COL5A3P25940 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
COL5A3P25940 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC26.11■■□□□ 1.77
COL5A3P25940 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms